trim-galore 0.6.5-1 source package in Ubuntu
Changelog
trim-galore (0.6.5-1) unstable; urgency=medium * Initial release (Closes: #933975) TODO: Write test script Deal with documentation * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.1 * Trim trailing whitespace. * Set upstream metadata fields: Repository, Repository-Browse. -- Steffen Moeller <email address hidden> Wed, 04 Dec 2019 14:41:47 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Focal | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
trim-galore_0.6.5-1.dsc | 2.0 KiB | cc60f26bd0367d00878a512f08412866616c959929060b48261369f55636c6fd |
trim-galore_0.6.5.orig.tar.gz | 25.6 MiB | 3e92c2f5b6147a30f774a5bea4b344aebb014d6dd9b3e9b55a72046b04485783 |
trim-galore_0.6.5-1.debian.tar.xz | 2.5 KiB | b3e2ba5d026d8054ff9a581b8738d00e8fbacf58735d63f2d2c8c859658ffc33 |
Available diffs
- diff from 0.6.4-1 to 0.6.5-1 (3.8 KiB)
No changes file available.
Binary packages built by this source
- trim-galore: automate quality and adapter trimming for DNA sequencing
Trim Galore! is a wrapper script to automate quality and adapter trimming
as well as quality control, with some added functionality to remove
biased methylation positions for RRBS sequence files (for directional,
non-directional (or paired-end) sequencing). It's main features are:
* For adapter trimming, Trim Galore! uses the first 13 bp of Illumina
standard adapters ('AGATCGGAAGAGC') by default (suitable for both ends
of paired-end libraries), but accepts other adapter sequence, too
* For MspI-digested RRBS libraries, Trim Galore! performs quality and
adapter trimming in two subsequent steps. This allows it to remove
2 additional bases that contain a cytosine which was artificially
introduced in the end-repair step during the library preparation
* For any kind of FastQ file other than MspI-digested RRBS, Trim
Galore! can perform single-pass adapter- and quality trimming
* The Phred quality of basecalls and the stringency for adapter removal
can be specified individually
* Trim Galore! can remove sequences if they become too short during
the trimming process. For paired-end files Trim Galore! removes entire
sequence pairs if one (or both) of the two reads became shorter than
the set length cutoff. Reads of a read-pair that are longer than a
given threshold but for which the partner read has become too short
can optionally be written out to single-end files. This ensures that
the information of a read pair is not lost entirely if only one read
is of good quality
* Trim Galore! can trim paired-end files by 1 additional bp from the 3'
end of all reads to avoid problems with invalid alignments with Bowtie 1
* Trim Galore! accepts and produces standard or gzip compressed FastQ files
* FastQC can optionally be run on the resulting output files once
trimming has completed