maffilter 1.3.1+dfsg-3 source package in Ubuntu
Changelog
maffilter (1.3.1+dfsg-3) unstable; urgency=medium * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) -- Andreas Tille <email address hidden> Tue, 12 Oct 2021 09:00:57 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Jammy | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| maffilter_1.3.1+dfsg-3.dsc | 2.2 KiB | e8d62e90660cd4520e6662eda573b09d3960a2dd512b8393703c9c6a5d5164b3 |
| maffilter_1.3.1+dfsg.orig.tar.xz | 75.0 MiB | 1767aae6061ca7d12682f7ded1e1b9f6ecad3d03fcfa02ff24b5351d51d8dc70 |
| maffilter_1.3.1+dfsg-3.debian.tar.xz | 4.5 KiB | 6b3a10914169cc598d487bad94724d10da363a56d5ccb331ccfcbb56d16abd75 |
Available diffs
No changes file available.
Binary packages built by this source
- maffilter: process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
- maffilter-dbgsym: No summary available for maffilter-dbgsym in ubuntu kinetic.
No description available for maffilter-dbgsym in ubuntu kinetic.
- maffilter-examples: process genome alignment in the Multiple Alignment Format (example data)
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
.
This package provides example data for maffilter.
