mindthegap 2.2.3-4 source package in Ubuntu
Changelog
mindthegap (2.2.3-4) unstable; urgency=medium * Team upload * Versioned (Build-)Depends: libgatbcore* (>= 1.4.2+dfsg-7) -- Andreas Tille <email address hidden> Fri, 17 Dec 2021 07:02:36 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Jammy | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| mindthegap_2.2.3-4.dsc | 2.1 KiB | 843c8675bab33e81e8cbcf614609732b929b925f25f16a54ae904e325709834a |
| mindthegap_2.2.3.orig.tar.gz | 720.0 KiB | 82a6dc27b3e427f34fc11716de6ad204e369edbcb92fe061da5a7b805e3e5dfe |
| mindthegap_2.2.3-4.debian.tar.xz | 7.2 KiB | bbaebefb6ab5aeb7cf418aa0e5b2ef99cb7258c72a4d7d2711ab3f86dbb76d88 |
Available diffs
- diff from 2.2.3-3 to 2.2.3-4 (627 bytes)
No changes file available.
Binary packages built by this source
- mindthegap: performs detection and assembly of DNA insertion variants in NGS read datasets
Designed to call insertions of any size, whether they are novel or
duplicated, homozygous or heterozygous in the donor genome. It takes as
input a set of reads and a reference genome. It outputs two sets of
FASTA sequences: one is the set of breakpoints of detection insertion
sites, the other is the set of assembled insertions for each
breakpoint. MindTheGap can also be used as a genome assembly finishing
tool. It can fill the gaps between a set of input contigs without any a
priori on their relative order and orientation. It outputs the results
in gfa file.
- mindthegap-dbgsym: No summary available for mindthegap-dbgsym in ubuntu kinetic.
No description available for mindthegap-dbgsym in ubuntu kinetic.
- mindthegap-examples: optional scripts and example resources for mindthegap
Designed to call insertions of any size, whether they are novel or
duplicated, homozygous or heterozygous in the donor genome. it takes
as input a set of reads and a reference genome. It outputs two sets
of FASTA sequences: one is the set of breakpoints of detection
insertion sites, the other is the set of assembled insertions for
each breakpoint. MindTheGap can also be used as a genome assembly
finishing tool. It can fill the gap between a set of input contigs
without any a priori on their relative order and orientation. It
outputs the results in gfa file. Please note that this package is
meant to accommodate the mindthegap package and only acts as example
to how this package can be utilised.
