trf 4.09.1-5 source package in Ubuntu
Changelog
trf (4.09.1-5) unstable; urgency=medium
* Team upload.
* Fix watchfile to detect new versions on github
* Standards-Version: 4.6.0 (routine-update)
* Apply multi-arch hints.
+ trf-examples: Add Multi-Arch: foreign.
-- Étienne Mollier <email address hidden> Sun, 10 Oct 2021 11:15:03 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Jammy | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| trf_4.09.1-5.dsc | 2.0 KiB | 94c2652f23180d76e68f9dc20a2c90ae04b1c4f13fc68c0773778fdcf906d6b4 |
| trf_4.09.1.orig.tar.gz | 267.7 KiB | 516015b625473350c3d1c9b83cac86baea620c8418498ab64c0a67029c3fb28a |
| trf_4.09.1-5.debian.tar.xz | 15.4 KiB | 76e9088c80d7823ffb976c7429b691ba2a28e3b235788d1fcdca783755ed2c15 |
Available diffs
- diff from 4.09.1-4 to 4.09.1-5 (898 bytes)
No changes file available.
Binary packages built by this source
- trf: locate and display tandem repeats in DNA sequences
A tandem repeat in DNA is two or more adjacent, approximate copies of a
pattern of nucleotides. Tandem Repeats Finder is a program to locate and
display tandem repeats in DNA sequences. In order to use the program,
the user submits a sequence in FASTA format. There is no need to specify
the pattern, the size of the pattern or any other parameter. The output
consists of two files: a repeat table file and an alignment file. The
repeat table, viewable in a web browser, contains information about each
repeat, including its location, size, number of copies and nucleotide
content. Clicking on the location indices for one of the table entries
opens a second browser page that shows an alignment of the copies
against a consensus pattern. The program is very fast, analyzing
sequences on the order of .5Mb in just a few seconds. Submitted
sequences may be of arbitrary length. Repeats with pattern size in the
range from 1 to 2000 bases are detected.
- trf-dbgsym: No summary available for trf-dbgsym in ubuntu kinetic.
No description available for trf-dbgsym in ubuntu kinetic.
- trf-examples: locate and display tandem repeats in DNA sequences (examples)
A tandem repeat in DNA is two or more adjacent, approximate copies of a
pattern of nucleotides. Tandem Repeats Finder is a program to locate and
display tandem repeats in DNA sequences. In order to use the program,
the user submits a sequence in FASTA format. There is no need to specify
the pattern, the size of the pattern or any other parameter. The output
consists of two files: a repeat table file and an alignment file. The
repeat table, viewable in a web browser, contains information about each
repeat, including its location, size, number of copies and nucleotide
content. Clicking on the location indices for one of the table entries
opens a second browser page that shows an alignment of the copies
against a consensus pattern. The program is very fast, analyzing
sequences on the order of .5Mb in just a few seconds. Submitted
sequences may be of arbitrary length. Repeats with pattern size in the
range from 1 to 2000 bases are detected.
.
This package contains the example data for trf.
