estscan 3.0.3-6 source package in Ubuntu
Changelog
estscan (3.0.3-6) unstable; urgency=medium [ Shruti Sridhar ] * Team Upload. * Add test data * Add autopkgtests * Install docs -- Shruti Sridhar <email address hidden> Mon, 16 Aug 2021 17:16:42 +0530
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| estscan_3.0.3-6.dsc | 1.9 KiB | 86a16bfd8f552fa587c9ee760fe1bf8e746c18363eca86bb39ec4ee47acdcf76 |
| estscan_3.0.3.orig.tar.gz | 45.3 KiB | 037dc8770681ed12406a789ea292462a4ce5d89b0e906a1a3340aa4debc71e2f |
| estscan_3.0.3-6.debian.tar.xz | 12.7 KiB | 719a8477d3ee19a64e25df2a42a3800c64a04cd6064dc6ba671a17ce3b29b54f |
Available diffs
- diff from 3.0.3-5 to 3.0.3-6 (10.7 KiB)
No changes file available.
Binary packages built by this source
- estscan: ORF-independent detector of coding DNA sequences
ESTScan is a program that can detect coding regions in DNA sequences,
even if they are of low quality. ESTScan will also detect and correct
sequencing errors that lead to frameshifts. ESTScan is not a gene
prediction program , nor is it an open reading frame detector. In fact,
its strength lies in the fact that it does not require an open reading
frame to detect a coding region. As a result, the program may miss a
few translated amino acids at either the N or the C terminus, but will
detect coding regions with high selectivity and sensitivity.
.
ESTScan takes advantages of the bias in hexanucleotide usage found in
coding regions relative to non-coding regions. This bias is formalized
as an inhomogeneous 3-periodic fifth-order Hidden Markov Model
(HMM). Additionally, the HMM of ESTScan has been extended to allows
insertions and deletions when these improve the coding region statistics.
- estscan-dbgsym: debug symbols for estscan
