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jellyfish package

jellyfish 2.3.0-15build1 source package in Ubuntu

Changelog

jellyfish (2.3.0-15build1) lunar; urgency=medium

  * Rebuild to drop Python 3.10 extension

 -- Jeremy Bicha <email address hidden>  Tue, 28 Feb 2023 17:21:43 -0500

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Uploaded by:
Jeremy Bícha
Uploaded to:
Lunar
Original maintainer:
Debian Med
Architectures:
amd64 arm64 armel armhf i386 mips64el ppc64el hppa hurd-i386 ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 all
Section:
science
Urgency:
Medium Urgency

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Series Pocket Published Component Section
Lunar release universe science

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File Size SHA-256 Checksum
jellyfish_2.3.0.orig.tar.gz 663.2 KiB 29ead991de90151dbe4a2717f7ac30b3852296c9cbdda8b001121a1f2fa714db
jellyfish_2.3.0-15build1.debian.tar.xz 15.1 KiB 6f3adb366bb18046e8fe085ed066a990c70c29fe12ef3902df54fedbc55a64d1
jellyfish_2.3.0-15build1.dsc 3.1 KiB 0ebf79a5f8a862d5a7d4a6444b060845d27d2d1c61ea9accba8f9528b02f3e85

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Binary packages built by this source

jellyfish: count k-mers in DNA sequences

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.

jellyfish-dbgsym: debug symbols for jellyfish
jellyfish-examples: count k-mers in DNA sequences (examples for testing)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains examples to test the package

libjellyfish-2.0-2: count k-mers in DNA sequences (dynamic library of jellyfish)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains the dynamic library the main executable of
 jellyfish is linked to.

libjellyfish-2.0-2-dbgsym: debug symbols for libjellyfish-2.0-2
libjellyfish-2.0-dev: count k-mers in DNA sequences (development files of jellyfish)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains the development files (static library and
 header files)

libjellyfish-perl: count k-mers in DNA sequences (Perl bindings of jellyfish)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains the Perl bindings of jellyfish.

libjellyfish-perl-dbgsym: debug symbols for libjellyfish-perl
python3-dna-jellyfish: count k-mers in DNA sequences (Python bindings of jellyfish)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains the Python bindings of jellyfish.

python3-dna-jellyfish-dbgsym: debug symbols for python3-dna-jellyfish