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python-pairix package

python-pairix 0.3.7-6build1 source package in Ubuntu

Changelog

python-pairix (0.3.7-6build1) lunar; urgency=medium

  * Rebuild to drop Python 3.10 extension

 -- Jeremy Bicha <email address hidden>  Tue, 28 Feb 2023 19:38:06 -0500

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Uploaded by:
Jeremy Bícha
Uploaded to:
Lunar
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

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Series Pocket Published Component Section
Mantic release universe misc
Lunar release universe misc

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File Size SHA-256 Checksum
python-pairix_0.3.7.orig.tar.gz 167.3 MiB c0de5fb5baea2bf90a6179f9c81c911e2fb951b716b38574f73ac5b23ac84969
python-pairix_0.3.7-6build1.debian.tar.xz 4.8 KiB 6b87d6bd8cb09fdc8cac66870e30073590d70d38c643f1ddcd6327fbae37975f
python-pairix_0.3.7-6build1.dsc 2.2 KiB d340418a5f73d9fa727cb3dd3e44f0c4de1fc556502570a9688ee24b814f15b0

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Binary packages built by this source

python-pairix-examples: 1D/2D indexing and querying with a pair of genomic coordinates (examples)

 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.
 .
 This package contains some example data to test the package.

python3-pairix: 1D/2D indexing and querying with a pair of genomic coordinates

 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.

python3-pairix-dbgsym: debug symbols for python3-pairix