Ubuntu
rna-star package

rna-star 2.7.10b+dfsg-2 source package in Ubuntu

Changelog

rna-star (2.7.10b+dfsg-2) unstable; urgency=medium

  * Team upload.
  * debian/patches/packaged_simde: Use packaged SIMDe header, not the
    code-copy.
  * Standards-Version: 4.6.2 (routine-update)

 -- Michael R. Crusoe <email address hidden>  Sun, 22 Jan 2023 15:33:29 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
amd64 arm64 ppc64el mips64el
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release universe misc
Lunar release universe misc

Downloads

File Size SHA-256 Checksum
rna-star_2.7.10b+dfsg-2.dsc 2.1 KiB 18abe03f5feb75c2a22cf5808b7edf81400a3572231756379bf64cad02469d23
rna-star_2.7.10b+dfsg.orig.tar.xz 605.0 KiB 77b61638b3eda7f429364b1f1ff8fc806d95ee55a3c5992c25b29a641c9a83c4
rna-star_2.7.10b+dfsg-2.debian.tar.xz 369.3 KiB 62fb8dac5feb22cbcab53c12e57dac4a4f6763171f67d0c8c3b3ee12ff1645d3

Available diffs

No changes file available.

Binary packages built by this source

rna-star: ultrafast universal RNA-seq aligner

 Spliced Transcripts Alignment to a Reference (STAR) software based on a
 previously undescribed RNA-seq alignment algorithm that uses sequential
 maximum mappable seed search in uncompressed suffix arrays followed by
 seed clustering and stitching procedure. STAR outperforms other aligners
 by a factor of >50 in mapping speed, aligning to the human genome 550
 million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
 while at the same time improving alignment sensitivity and precision. In
 addition to unbiased de novo detection of canonical junctions, STAR can
 discover non-canonical splices and chimeric (fusion) transcripts, and is
 also capable of mapping full-length RNA sequences. Using Roche 454
 sequencing of reverse transcription polymerase chain reaction amplicons,
 the authors experimentally validated 1960 novel intergenic splice
 junctions with an 80-90% success rate, corroborating the high precision
 of the STAR mapping strategy.

rna-star-dbgsym: debug symbols for rna-star