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augustus package

augustus 3.5.0+dfsg-3build1 source package in Ubuntu

Changelog

augustus (3.5.0+dfsg-3build1) mantic; urgency=medium

  * No-change rebuild against libcolamd3

 -- Graham Inggs <email address hidden>  Mon, 14 Aug 2023 14:26:09 +0000

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Uploaded by:
Graham Inggs
Uploaded to:
Mantic
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

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Series Pocket Published Component Section
Mantic release universe misc

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File Size SHA-256 Checksum
augustus_3.5.0+dfsg.orig.tar.xz 144.8 MiB 30a2a5200e7201a28383bebb98350eab9e043e38d0f7b825a1c8a614a6e68dc8
augustus_3.5.0+dfsg-3build1.debian.tar.xz 19.7 KiB 0137cdc139afc9ea10b4dd267b75d08bc5f9dcb3419fe97d57ac4c14d0c91036
augustus_3.5.0+dfsg-3build1.dsc 2.3 KiB aa21101ffc038dbdfbd9a7394ca447ab1a661b338186919d200297e4151809b4

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Binary packages built by this source

augustus: gene prediction in eukaryotic genomes

 AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences
 that is based on a generalized hidden Markov model (HMM), a probabilistic
 model of a sequence and its gene structure. After learning gene structures
 from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new
 sequence and annotates it with the regions of identified genes. External hints,
 e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide
 and improve the gene finding process. The result is the set of most likely gene
 structures that comply with all given user constraints, if such gene
 structures exist.
 AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts
 to train custom models using annotated genomes.

augustus-data: data files for AUGUSTUS

 This package contains pre-trained species models and other required
 architecture-independent data files for the AUGUSTUS gene finder. These are
 needed to identify gene structures in these or related organisms.

augustus-dbgsym: debug symbols for augustus
augustus-doc: documentation files for AUGUSTUS

 This package contains documentation for AUGUSTUS: a comprehensive manual-style
 README both for AUGUSTUS in general as well as for its comparative gene
 prediction (cgp) mode, as well as a HTML tutorial.