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ea-utils package

ea-utils 1.1.2+dfsg-9build1 source package in Ubuntu

Changelog

ea-utils (1.1.2+dfsg-9build1) jammy; urgency=medium

  * No-change rebuild against libgsl27

 -- Steve Langasek <email address hidden>  Tue, 07 Dec 2021 17:29:08 +0000

Upload details

Uploaded by:
Steve Langasek
Uploaded to:
Jammy
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

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Oracular release universe misc
Noble release universe misc
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Lunar release universe misc
Jammy release universe misc

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File Size SHA-256 Checksum
ea-utils_1.1.2+dfsg.orig.tar.xz 133.6 KiB d19298532ba694a09b194c208d647c7ddd94d79f1cf461431df6c6f4ffd9f93f
ea-utils_1.1.2+dfsg-9build1.debian.tar.xz 31.7 KiB 93f32547b1b960225e99808ac8bc6b2ae59761705fefceb6a8b9d33da01eb46b
ea-utils_1.1.2+dfsg-9build1.dsc 2.2 KiB d3612c072aaa5ce6eb1c2bc28f61fec3366db709ff4bbb32d3c48df49d0c002f

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Binary packages built by this source

ea-utils: command-line tools for processing biological sequencing data

 Ea-utils provides a set of command-line tools for processing biological
 sequencing data, barcode demultiplexing, adapter trimming, etc.
 .
 Primarily written to support an Illumina based pipeline - but should work with
 any FASTQs.
 .
 Main Tools are:
 .
  * fastq-mcf
 Scans a sequence file for adapters, and, based on a log-scaled threshold,
 determines a set of clipping parameters and performs clipping. Also does
 skewing detection and quality filtering.
  * fastq-multx
 Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
 master set fields. Keeps multiple reads in-sync during demultiplexing. Can
 verify that the reads are in-sync as well, and fail if they're not.
  * fastq-join
 Similar to audy's stitch program, but in C, more efficient and supports some
 automatic benchmarking and tuning. It uses the same "squared distance for
 anchored alignment" as other tools.
  * varcall
 Takes a pileup and calculates variants in a more easily parameterized manner
 than some other tools.

ea-utils-dbgsym: debug symbols for ea-utils