maffilter 1.3.1+dfsg-5 source package in Ubuntu
Changelog
maffilter (1.3.1+dfsg-5) unstable; urgency=medium * Team upload. * Standards-Version: 4.6.2 (routine-update) -- Michael R. Crusoe <email address hidden> Sun, 13 Aug 2023 12:55:55 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Mantic | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| maffilter_1.3.1+dfsg-5.dsc | 2.2 KiB | 7ea98d997b1a3cc4a021ac868a68eaa5058b9d2659bf4d28bb977a3129e9b42b |
| maffilter_1.3.1+dfsg.orig.tar.xz | 75.0 MiB | 1767aae6061ca7d12682f7ded1e1b9f6ecad3d03fcfa02ff24b5351d51d8dc70 |
| maffilter_1.3.1+dfsg-5.debian.tar.xz | 4.6 KiB | 0885daf3791bdd7aac7f4066f41d38bccef05a106197b62f02dbf8e06a832f30 |
Available diffs
- diff from 1.3.1+dfsg-4 to 1.3.1+dfsg-5 (464 bytes)
No changes file available.
Binary packages built by this source
- maffilter: process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
- maffilter-dbgsym: debug symbols for maffilter
- maffilter-examples: process genome alignment in the Multiple Alignment Format (example data)
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
.
This package provides example data for maffilter.
