Ubuntu
t-coffee package

t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 source package in Ubuntu

Changelog

t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) unstable; urgency=medium

  [ Étienne Mollier ]
  * d/t/run-unit-test: don't meddle with user's home.
  * d/rules: build with -fsigned-char.
    This fixes infinite loops on CPU architectures defaulting to the char
    type being unsigned, such as on arm*, ppc* and s390*. (Closes: #1023230)
  * d/control: add myself to uploaders.

  [ Andreas Tille ]
  * Revert version bump to latest upstream version until
     https://github.com/cbcrg/tcoffee/issues/56
    is closed.
    Closes: #1022570
  * Keep updated patches in debian/patches dir with suffix .13.45.0.4846264
    to ease upgrading to the new version once it is ready

 -- Andreas Tille <email address hidden>  Fri, 25 Nov 2022 11:13:19 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe science
Noble release universe science
Mantic release universe science
Lunar release universe science

Downloads

File Size SHA-256 Checksum
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.dsc 2.3 KiB 943f72d4090cf2a8b88ab2a79b5aa119622201b3c7e50377cb8d92c4e72636f7
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg.orig.tar.xz 3.1 MiB a1b37c67caba574ccf53c38279863dffa67d62232e017317754b5eb29db60746
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.debian.tar.xz 17.9 KiB 3e83e95b016af77d28fc7d8315979dd397f12f333bcd4a45be5f471dbd9964ed

No changes file available.

Binary packages built by this source

t-coffee: Multiple Sequence Alignment

 T-Coffee is a multiple sequence alignment package. Given a set of
 sequences (Proteins or DNA), T-Coffee generates a multiple sequence
 alignment. Version 2.00 and higher can mix sequences and structures.
 .
 T-Coffee allows the combination of a collection of multiple/pairwise,
 global or local alignments into a single model. It can also
 estimate the level of consistency of each position within the new
 alignment with the rest of the alignments. See the pre-print for more
 information
 .
 T-Coffee has a special called M-Coffee that makes it possible to combine the
 output of many multiple sequence alignment packages. In its published version,
 it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
 T-Coffee. A special version has been made for Debian, DM-Coffee, that uses
 only free software by replacing Clustal W by Kalign. Using the 8 Methods of
 M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
 methods if you prefer.

t-coffee-dbgsym: debug symbols for t-coffee
t-coffee-examples: annotated examples for the use of T-Coffee

 To help increasing the proficiency in the use of T-Coffee, this
 package provides examples for input sequences and their proper
 alignment.