Ubuntu
trf package

trf 4.09.1-6 source package in Ubuntu

Changelog

trf (4.09.1-6) unstable; urgency=medium

  * d/control: add myself to uploaders.
  * d/watch: fix watch file; use git mode.
  * d/control: declare compliance to standards version 4.6.1.
  * typo.patch: added; fix typo caught by lintian.
  * d/copyright: bump copyright year for debian/*.

 -- Étienne Mollier <email address hidden>  Sun, 02 Oct 2022 14:59:22 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc
Noble release universe misc
Mantic release universe misc
Lunar release universe misc

Downloads

File Size SHA-256 Checksum
trf_4.09.1-6.dsc 2.0 KiB cdcb1d18cbca9c161c99afd8523e0b9d0a078c12e1fbb1ef3a3c83e285733803
trf_4.09.1.orig.tar.gz 267.7 KiB 516015b625473350c3d1c9b83cac86baea620c8418498ab64c0a67029c3fb28a
trf_4.09.1-6.debian.tar.xz 15.7 KiB 38e74c5ffad47861b2d3d70a4aec273f6904980b3ff856d75e84177a6252aa84

Available diffs

No changes file available.

Binary packages built by this source

trf: locate and display tandem repeats in DNA sequences

 A tandem repeat in DNA is two or more adjacent, approximate copies of a
 pattern of nucleotides. Tandem Repeats Finder is a program to locate and
 display tandem repeats in DNA sequences. In order to use the program,
 the user submits a sequence in FASTA format. There is no need to specify
 the pattern, the size of the pattern or any other parameter. The output
 consists of two files: a repeat table file and an alignment file. The
 repeat table, viewable in a web browser, contains information about each
 repeat, including its location, size, number of copies and nucleotide
 content. Clicking on the location indices for one of the table entries
 opens a second browser page that shows an alignment of the copies
 against a consensus pattern. The program is very fast, analyzing
 sequences on the order of .5Mb in just a few seconds. Submitted
 sequences may be of arbitrary length. Repeats with pattern size in the
 range from 1 to 2000 bases are detected.

trf-dbgsym: debug symbols for trf
trf-examples: locate and display tandem repeats in DNA sequences (examples)

 A tandem repeat in DNA is two or more adjacent, approximate copies of a
 pattern of nucleotides. Tandem Repeats Finder is a program to locate and
 display tandem repeats in DNA sequences. In order to use the program,
 the user submits a sequence in FASTA format. There is no need to specify
 the pattern, the size of the pattern or any other parameter. The output
 consists of two files: a repeat table file and an alignment file. The
 repeat table, viewable in a web browser, contains information about each
 repeat, including its location, size, number of copies and nucleotide
 content. Clicking on the location indices for one of the table entries
 opens a second browser page that shows an alignment of the copies
 against a consensus pattern. The program is very fast, analyzing
 sequences on the order of .5Mb in just a few seconds. Submitted
 sequences may be of arbitrary length. Repeats with pattern size in the
 range from 1 to 2000 bases are detected.
 .
 This package contains the example data for trf.