Ubuntu
vdjtools package

vdjtools 1.2.1+git20190311+repack-1 source package in Ubuntu

Changelog

vdjtools (1.2.1+git20190311+repack-1) unstable; urgency=medium

  * Team upload.
  * New upstream version 1.2.1+git20190311+repack:
    - Repacking to remove the gradle directory and the gradlew script
  * Using javahelper for the build
  * Setting the classpath of the built jar
  * Revising the list of (build-)dependencies
  * Setting the Section of the -java package to non-free/java
  * Adding a Comment in d/copyright to explain why the package lies in non-free
  * Simplifying d/maven.rules
  * Removing unneeded files from the debian/ directory
  * Adding a header to the patch
  * Setting /bin/sh in the shebang of our provided shell script
  * Updating the list of dependencies in the patch
  * Using maven_repo_helper to provide Maven artifacts
  * Removing the flatDir directory in build.gradle to build with a proper
    classpath
  * Preventing gradle from shipping a fat jar with bundled dependencies

  [ Andreas Tille ]
  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)

 -- Pierre Gruet <email address hidden>  Sun, 04 Dec 2022 07:17:24 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release multiverse misc
Lunar release multiverse misc

Builds

Lunar: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
vdjtools_1.2.1+git20190311+repack-1.dsc 2.3 KiB 4393b021b2453267e6ca19f1308dbc131fcbdd0c1ffacf1275f8f507bae13229
vdjtools_1.2.1+git20190311+repack.orig.tar.gz 9.7 MiB 31d5a17ee07163ec5926bdd5424a43d6f4295a201488843536b02b78ee6381c4
vdjtools_1.2.1+git20190311+repack-1.debian.tar.xz 6.6 KiB c239fb1ccd8232552e98de2a84da9ad82f01bc21555268f0afdd4c5fe6a3c09a

No changes file available.

Binary packages built by this source

libvdjtools-java: Java library of vdjtools

 The VDJtools are interacting with the R statistics environment
 to characterize the constitution of the immune repertoire
 of B and T cells.
 This package provides the Java library.

vdjtools: framework for post-analysis of B/T cell repertoires

 VDJtools is an open-source Java/Groovy-based framework designed
 to facilitate analysis of immune repertoire sequencing (RepSeq)
 data. VDJtools computes a wide set of statistics and is able to perform
 various forms of cross-sample analysis. Both comprehensive tabular
 output and publication-ready plots are provided.
 .
 The main aims of the VDJtools Project are:
 .
  * To ensure consistency between post-analysis methods and results
  * To save the time of bioinformaticians analyzing RepSeq data
  * To create an API framework facilitating development of new RepSeq
    analysis applications
  * To provide a simple enough command line tool so it could be used by
    immunologists and biologists with little computational background