vienna-rna 2.5.1+dfsg-1 source package in Ubuntu
Changelog
vienna-rna (2.5.1+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* Team upload.
* New upstream version
* Point watch file to github
* Standards-Version: 4.6.2 (routine-update)
* Update lintian override info format in d/vienna-rna.lintian-overrides on
line 5-7.
* DEP3
* Build-Depends: libdlib-dev
* Use Debian packaged dlib
* Fix module name for autopkgtest-pkg-python
[ Étienne Mollier ]
* d/control: build depends on liblapack-dev.
* use_debian_packaged_dlib.patch: link bin/ components against lapack.
* use_debian_packaged_dlib.patch: link also Perl modules.
* use_debian_packaged_dlib.patch: link also Python 3 module.
* d/rules: ventilate dh_auto_configure target.
* d/rules: upstream assumes --with-python is for python3 now.
* python3.11.patch: restore in the d/t/series.
* python3.11.patch: hardcode .so extension.
-- Andreas Tille <email address hidden> Fri, 10 Feb 2023 07:19:56 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Mantic | release | multiverse | misc | |
| Lunar | release | multiverse | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| vienna-rna_2.5.1+dfsg-1.dsc | 2.4 KiB | ce60158f072ab372a8363a191b511ab16f3cb31464a41c01013c43f312267592 |
| vienna-rna_2.5.1+dfsg.orig.tar.xz | 19.3 MiB | 00aa22ba147d35bb545207edc07de6c43e16dd2f0f52b82369c89cd85d3a0f8d |
| vienna-rna_2.5.1+dfsg-1.debian.tar.xz | 11.4 KiB | 997d5ae76bc4d79413cb292a2a24d13652959c8c40da70b508036ad195bbae1e |
Available diffs
No changes file available.
Binary packages built by this source
- librna-perl: ViennaRNA perl wrappers
Perl wrappers above ViennaRNA library.
.
The Vienna RNA Package consists of a C code library and several
stand-alone programs for the prediction and comparison of RNA secondary
structures
- python3-rna: ViennaRNA Python wrappers
Python wrappers above ViennaRNA library.
.
The Vienna RNA Package consists of a C code library and several
stand-alone programs for the prediction and comparison of RNA secondary
structures
- python3-rna-dbgsym: debug symbols for python3-rna
- vienna-rna: RNA sequence analysis
The Vienna RNA Package consists of a C code library and several
stand-alone programs for the prediction and comparison of RNA secondary
structures. It is developed and maintained by the group of Ivo Hofacker
in Vienna.
.
RNA secondary structure prediction through energy minimization is the
most used function in the package. It provides three kinds of dynamic
programming algorithms for structure prediction:
* the minimum free energy algorithm of (Zuker & Stiegler 1981) which
yields a single optimal structure,
* the partition function algorithm of (McCaskill 1990) which calculates
base pair probabilities in the thermodynamic ensemble, and the
suboptimal folding algorithm of (Wuchty et.al 1999) which generates
all suboptimal structures within a given energy range of the optimal
energy.
.
For secondary structure comparison, the package contains several
measures of distance (dissimilarities) using either string alignment or
tree-editing (Shapiro & Zhang 1990). Finally, is provided an algorithm
to design sequences with a predefined structure (inverse folding).
The RNAforester package is a tool for aligning RNA secondary structures
and it's user interface integrates to those of the tools of the
Vienna RNA package.
- vienna-rna-dbgsym: debug symbols for vienna-rna
