hts-nim-tools 0.2.1-1 source package in Ubuntu
Changelog
hts-nim-tools (0.2.1-1) unstable; urgency=medium * New upstream version -- Nilesh Patra <email address hidden> Fri, 13 Nov 2020 23:59:28 +0530
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | misc | |
| Noble | release | universe | misc | |
| Mantic | release | universe | misc | |
| Lunar | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| hts-nim-tools_0.2.1-1.dsc | 2.2 KiB | bdae7dfd1bda83f01ee9eb520dd313de3aa49648dc340fb261b4b14309e8f9aa |
| hts-nim-tools_0.2.1.orig.tar.gz | 6.6 KiB | fdb2a2f867b45d568c26f1b416f487a47746872678f9b9d3179665c89e2330c7 |
| hts-nim-tools_0.2.1-1.debian.tar.xz | 3.4 KiB | 985f7e13c54621f037ed09cc1ce5206adf32b1d769baf7430f7c7e740e7805be |
Available diffs
- diff from 0.2.0-3 to 0.2.1-1 (1.4 KiB)
No changes file available.
Binary packages built by this source
- hts-nim-tools: tools biological sequences: bam-filter, count-reads, vcf-check
This package provides several tools that (at least at the time of their
creation) provide functionalities beyond the routine provided by samtools
and other reverse dependencies of the htslib.
.
These new tools are
• bam-filter : filter BAM/CRAM/SAM files with a simple expression language
• count-reads: count BAM/CRAM reads in regions given in a BED file
• vcf-check : check regions of a VCF against a background for missing chunks
.
and yes, as the name suggests, these tools are all implemented in nim,
using the nim-hts (upstream: hts-nim) wrapper for the htslib.
- hts-nim-tools-dbgsym: debug symbols for hts-nim-tools
