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ivar package

ivar 1.4.2+dfsg-2ubuntu2 source package in Ubuntu

Changelog

ivar (1.4.2+dfsg-2ubuntu2) noble; urgency=medium

  * No-change rebuild against libhts3t64.

 -- Colin Watson <email address hidden>  Mon, 15 Apr 2024 11:58:14 +0100

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Uploaded by:
Colin Watson
Uploaded to:
Noble
Original maintainer:
Ubuntu Developers
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc
Noble release universe misc

Downloads

File Size SHA-256 Checksum
ivar_1.4.2+dfsg.orig.tar.xz 657.0 KiB 87fbc667080e95823734eeca0dfcec058ff18f1aca7aff89de7a82217a7d2968
ivar_1.4.2+dfsg-2ubuntu2.debian.tar.xz 45.3 KiB e439bcb5500bc9fc8c65b80d89012c5910c310f39145308fbeebf3c18b0346bf
ivar_1.4.2+dfsg-2ubuntu2.dsc 2.1 KiB 45689c31d14b94c6842fe3f3287c5228b2a69eb528cc0a106a9f76ad1a2e89f1

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Binary packages built by this source

ivar: functions broadly useful for viral amplicon-based sequencing

 iVar is a computational package that contains functions broadly useful
 for viral amplicon-based sequencing. Additional tools for metagenomic
 sequencing are actively being incorporated into iVar. While each of
 these functions can be accomplished using existing tools, iVar contains
 an intersection of functionality from multiple tools that are required
 to call iSNVs and consensus sequences from viral sequencing data across
 multiple replicates. iVar provided the following functions:
 .
  1. trimming of primers and low-quality bases,
  2. consensus calling,
  3. variant calling - both iSNVs and insertions/deletions, and
  4. identifying mismatches to primer sequences and excluding the
     corresponding reads from alignment files.

ivar-dbgsym: debug symbols for ivar
ivar-doc: functions broadly useful for viral amplicon-based sequencing (documentation)

 iVar is a computational package that contains functions broadly useful
 for viral amplicon-based sequencing. Additional tools for metagenomic
 sequencing are actively being incorporated into iVar. While each of
 these functions can be accomplished using existing tools, iVar contains
 an intersection of functionality from multiple tools that are required
 to call iSNVs and consensus sequences from viral sequencing data across
 multiple replicates. iVar provided the following functions:
 .
  1. trimming of primers and low-quality bases,
  2. consensus calling,
  3. variant calling - both iSNVs and insertions/deletions, and
  4. identifying mismatches to primer sequences and excluding the
     corresponding reads from alignment files.
 .
 This package contains the html documentation for ivar.