Ubuntu
libssw package

libssw 1.1-14build1 source package in Ubuntu

Changelog

libssw (1.1-14build1) noble; urgency=high

  * No change rebuild against frame pointers and time_t.

 -- Julian Andres Klode <email address hidden>  Mon, 22 Apr 2024 11:47:40 +0200

Upload details

Uploaded by:
Julian Andres Klode
Uploaded to:
Noble
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
misc
Urgency:
Very Urgent

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc
Noble release universe misc

Downloads

File Size SHA-256 Checksum
libssw_1.1.orig.tar.gz 11.8 MiB cdbc20740daeb188ed39413ea5ff9ae4cf72c4d7ccff1d2de2cac0446d64d99f
libssw_1.1-14build1.debian.tar.xz 53.0 KiB 459fdc212159cf9cf7ccf64d2d77c027bcd1136a4ecb8b26021f5fdfba48af53
libssw_1.1-14build1.dsc 2.4 KiB c6985d21810276337b3c7863165bb9d55b447b95ac3e02b3c541ff44a03d696a

Available diffs

View changes file

Binary packages built by this source

libssw-dev: Development headers and static libraries for libssw

 This package provides development headers and static libraries for libssw,
 a fast implementation of the Smith-Waterman algorithm using
 Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
 algorithm at the instruction level.

libssw-java: Java bindings for libssw

 This package provides JNI based Java bindings for libssw, a fast
 implementation of the Smith-Waterman algorithm using Single-Instruction
 Multiple-Data (SIMD) instructions to parallelize the algorithm at the
 instruction level.

libssw-java-dbgsym: debug symbols for libssw-java
libssw0: fast SIMD parallelized implementation of the Smith-Waterman algorithm

 SSW is a fast implementation of the Smith-Waterman algorithm, which uses the
 Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
 algorithm at the instruction level. SSW library provides an API that can be
 flexibly used by programs written in C, C++ and other languages. The library
 can do protein and genome alignment directly.
 Current version of this implementation is ~50 times faster than an ordinary
 Smith-Waterman. It can return the Smith-Waterman score, alignment location
 and traceback path (cigar) of the optimal alignment accurately; and return
 the sub-optimal alignment score and location heuristically.

libssw0-dbgsym: debug symbols for libssw0
ssw-align: Smith-Waterman aligner based on libssw

 This package provides a command-line aligner based on the libssw library,
 a fast SIMD accelerated implementation of the Smith-Waterman algorithm.
 The input files can be in FASTA or FASTQ format. Both target and query files
 can contain multiple sequences. Each sequence in the query file will be
 aligned with all sequences in the target file. Output is provided in SAM or
 BLAST-like text format.

ssw-align-dbgsym: debug symbols for ssw-align