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python-pairix package

python-pairix 0.3.7-7build1 source package in Ubuntu

Changelog

python-pairix (0.3.7-7build1) noble; urgency=medium

  * No-change rebuild with Python 3.12 only

 -- Graham Inggs <email address hidden>  Thu, 11 Apr 2024 10:46:43 +0000

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Uploaded by:
Graham Inggs
Uploaded to:
Noble
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc
Noble release universe misc

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python-pairix_0.3.7.orig.tar.gz 167.3 MiB c0de5fb5baea2bf90a6179f9c81c911e2fb951b716b38574f73ac5b23ac84969
python-pairix_0.3.7-7build1.debian.tar.xz 4.7 KiB 679227efcbaa4adbe7e20ef38483aa4f9dff08765f688501abcd877377ceb811
python-pairix_0.3.7-7build1.dsc 2.2 KiB 31f3ead752501631a3d1a63a5739f08c29660e5a96048e21185cb2d710a79094

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Binary packages built by this source

python-pairix-examples: 1D/2D indexing and querying with a pair of genomic coordinates (examples)

 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.
 .
 This package contains some example data to test the package.

python3-pairix: 1D/2D indexing and querying with a pair of genomic coordinates

 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.

python3-pairix-dbgsym: debug symbols for python3-pairix