med-bio 2.1ubuntu4 (amd64 binary) in ubuntu yakkety
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences.
Details
- Package version:
- 2.1ubuntu4
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of debian-med 2.1ubuntu4 in ubuntu xenial PROPOSED produced
these files:
- med-bio_2.1ubuntu4_all.deb (6.5 KiB)
Package relationships
- Depends on:
- Suggests:
- abyss
- acacia
- act
- amos-assembler
- amoscmp
- apollo
- arachne
- arb
- artemis
- asap
- augustus
- autodocktools
- axparafit
- axpcoords
- bagpipe
- ballview
- bambus
- beads
- beast-mcmc
- biceps
- big-blast
- bigsdb
- biomaj-watcher
- bitseq
- blat
- blimps-utils
- blixem
- btk-core
- cactus
- caftools
- cain
- cap3
- cdna-db
- cinema
- clonalorigin
- clustalw-mpi
- clustalx
- cluster3
- cmap
- coalesce
- codonw
- compclust
- contralign
- coot
- copycat
- crac
- crossbow
- cufflinks
- cytoscape
- das-proserver
- dazzle
- decipher
- e-hive
- ecell
- eigensoft
- elph
- embassy-phylip
- emboss-explorer
- emmax
- emperor
- ensembl
- est-db
- estferret
- estscan
- exalt
- excavator
- express
- fasta
- fasta3
- fastml2
- figaro
- finex
- fluctuate
- forester
- forge
- freebayes
- fsa
- galaxy
- gassst
- gatk
- gbioseq
- gbrowse-syn
- genemark
- genesplicer
- genetrack
- genezilla
- genographer
- gentle
- glimmerhmm
- gmap
- gmv
- grabix
- grogui
- gubbins
- haploview
- hawkeye
- hexamer
- hilbertvisgui
- htqc
- hyphy
- igv
- iva
- jaligner
- jbrowse
- jigsaw
- jstreeview
- kclust
- kempbasu
- khmer
- lagan
- lamarc
- logomat-m
- lucy
- mach-haplotyper
- mage2tab
- maker2
- martj
- maude
- maxd
- melting-gui
- meme
- mesquite
- metarep
- metastudent-data
- metastudent-data-2
- metastudent-data-3
- migrate
- minimus
- mirbase
- mobyle
- mobyle-programs
- mobyle-tutorials
- modeller
- molekel
- mosaik-aligner
- mpsqed
- msatfinder
- mugsy
- mummergpu
- murasaki
- mview
- ngila
- ngsqctoolkit
- nw-align
- oases
- obitools
- obo-edit
- oligoarrayaux
- omegamap
- openms
- operondb
- pal2nal
- paml
- partigene
- patman
- patristic
- pcma
- pfaat
- pftools
- phagefinder
- phpphylotree
- phylip
- phylographer
- phyloviz-core
- phylowin
- plato
- plip
- profit
- prokka
- prot4est
- pscan-tfbs
- psipred
- pyrophosphate-tools
- python-orange
- python-reaper
- qtlcart
- r-bioc-ebseq
- r-cran-boolnet
- r-other-apmswapp
- r-other-valdar-bagphenotype.library
- r8s
- raccoon
- raster3d
- rbs-finder
- recombine
- relion-bin-mpi
- relion-gui
- repeatmasker
- rmblast
- roche454ace2caf
- rose
- rosetta
- rsem
- sap
- seaview
- sequenceconverter.app
- sga
- sift
- situs
- smrtanalysis
- snpeff
- spades
- spice
- splitstree
- spread-phy
- ssaha
- strap
- strap-base
- tacg
- taverna
- taxinspector
- tetra
- tigr-assembler
- tigr-glimmer-mg
- topp
- trace2dbest
- tracetuner
- treebuilder3d
- treetime
- treeview
- trinityrnaseq
- tripal
- trnascan-se
- twain
- unc-fish
- uniprime
- varscan
- vienna-rna
- vmd
- wgs-assembler
- x-tandem-pipeline
- zodiac-zeden
- Recommends:
- abacas
- acedb-other
- acedb-other-belvu
- acedb-other-dotter
- adun.app
- aegean
- aevol
- alien-hunter
- altree
- amap-align
- ampliconnoise
- anfo
- aragorn
- arden
- autodock
- autodock-vina
- autogrid
- bamtools
- barrnap
- bedtools
- biomaj
- blast2
- bowtie
- bowtie2
- boxshade
- bwa
- cassiopee
- cd-hit
- cdbfasta
- chimeraslayer
- circos
- clearcut
- clonalframe
- clustalo
- clustalw
- concavity
- conservation-code
- dialign
- dialign-tx
- discosnp
- disulfinder
- dnaclust
- dssp
- ecopcr
- edtsurf
- embassy-domainatrix
- embassy-domalign
- embassy-domsearch
- emboss
- exonerate
- fastaq
- fastdnaml
- fastlink
- fastqc
- fasttree
- fastx-toolkit
- ffindex
- figtree
- filo
- fitgcp
- flexbar
- freecontact
- gamgi
- garlic
- gasic
- gbrowse
- gdpc
- genometools
- gff2aplot
- gff2ps
- ghemical
- giira
- glam2
- grinder
- gromacs
- gwama
- hhsuite
- hmmer
- hmmer2
- idba
- infernal
- ipig
- jalview
- jellyfish
- jmol
- kalign
- kissplice
- kmer
- last-align
- librg-utils-perl
- logol-bin
- loki
- ltrsift
- macs
- macsyfinder
- mafft
- mapsembler2
- maq
- maqview
- massxpert
- mauve-aligner
- melting
- metastudent
- microbegps
- microbiomeutil
- minia
- mipe
- mira-assembler
- mlv-smile
- mothur
- mrbayes
- mrs
- mummer
- muscle
- mustang
- nast-ier
- ncbi-blast+
- ncbi-epcr
- ncbi-seg
- ncbi-tools-bin
- ncbi-tools-x11
- ncoils
- neobio
- njplot
- norsnet
- norsp
- paraclu
- parsinsert
- pdb2pqr
- perlprimer
- perm
- phyml
- phyutility
- picard-tools
- plasmidomics
- plink
- poa
- populations
- prank
- predictnls
- predictprotein
- prime-phylo
- primer3
- proalign
- probabel
- probalign
- probcons
- proda
- prodigal
- profbval
- profisis
- profnet-bval
- profnet-chop
- profnet-con
- profnet-isis
- profnet-md
- profnet-norsnet
- profnet-prof
- profnet-snapfun
- profphd
- profphd-net
- profphd-utils
- proftmb
- progressivemauve
- pycorrfit
- pymol
- pynast
- pyscanfcs
- python-cogent
- qiime
- r-bioc-biostrings
- r-bioc-cummerbund
- r-bioc-gviz
- r-bioc-hilbertvis
- r-bioc-rtracklayer
- r-cran-ape
- r-cran-genabel
- r-cran-phangorn
- r-cran-qtl
- r-cran-seqinr
- r-cran-vegan
- r-other-bio3d
- r-other-mott-happy.hbrem
- rasmol
- rate4site
- raxml
- ray
- rdp-alignment
- rdp-classifier
- rdp-readseq
- readseq
- relion-bin
- reprof
- rna-star
- rnahybrid
- rtax
- saint
- samtools
- scythe
- seq-gen
- seqan-apps
- seqprep
- seqtk
- sibsim4
- sickle
- sigma-align
- sim4
- smalt
- snap
- snp-sites
- soapdenovo
- soapdenovo2
- squizz
- sra-toolkit
- ssake
- stacks
- staden
- staden-io-lib-utils
- subread
- swarm
- t-coffee
- tabix
- theseus
- tigr-glimmer
- tm-align
- tophat
- toppred
- transdecoder
- transtermhp
- tree-puzzle
- treeviewx
- trimmomatic
- uc-echo
- ugene
- vcftools
- velvet
- velvetoptimiser
- vsearch
- wigeon
- wise
- zalign
