compizconfig-settings-manager has problems with keybinding

Binary package hint: compizconfig-settings-manager

Using the compizconfig-settings-manager to set keybindings is confusing. First you can't capture the key/mouse sequence, you have to type it. This is specially confusing regarding the windows key which is called Super.
Besides that, setting the Desktop Cube Rotate to <Super>Button4 for left and <Super>Button5 for right does not work. Even if I change the bindings for Desktop zoom (which are originally bound to these keys - and work) using this for Desktop cube rotate does not work.
If I use gconf instead of ccsm this works, but the only way I found to use gconf is to delete /usr/lib/compiz/libccp.so (or to change the compiz script).
When I try to change the Raise Window mouse binding in the "General Options" of the CompizConfig from <Control>Button6 to <Alt>Button2 this change has no effect as the original <Control>Button6 returns. Since <Alt>Button2 is used for window resize, if I chose "disable initiate window resize" in the popup window the Move Window binding changes from <Alt>Button1 to Button1 forcing me to navigate with the keyboard since the left click invokes window move instead of operating the window.