Change log for bioperl package in Debian
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bioperl (1.7.8-1) unstable; urgency=medium * Team Upload. * New upstream version 1.7.8 * Remove d/p/FTlineParsingHickups.patch: merged upstream * Bump debhelper-compat version to 13 * Declare compliance with policy 4.5.1 * Add d/salsa-ci.yml -- Nilesh Patra <email address hidden> Sun, 15 Aug 2021 18:26:03 +0530
Available diffs
- diff from 1.7.7-2 to 1.7.8-1 (34.4 KiB)
bioperl (1.7.7-2) unstable; urgency=medium * Prepared patch to parse current feature table layout * d/control: updated standard to 4.5, added R-R-R: no -- Steffen Moeller <email address hidden> Wed, 28 Oct 2020 18:49:40 +0100
Available diffs
- diff from 1.7.7-1 to 1.7.7-2 (1.2 KiB)
bioperl (1.7.7-1) unstable; urgency=medium * Team upload. * New upstream release. -- Michael R. Crusoe <email address hidden> Sat, 14 Dec 2019 22:48:17 +0100
Available diffs
- diff from 1.7.6-3 to 1.7.7-1 (33.2 KiB)
bioperl (1.7.6-3) unstable; urgency=medium * Team upload. * Really fix the breaks+replaces for libbio-perl-run-perl (Closes: #921495) -- Michael R. Crusoe <email address hidden> Thu, 28 Nov 2019 13:06:59 +0100
Available diffs
- diff from 1.7.2-3 to 1.7.6-3 (5.1 MiB)
- diff from 1.7.6-2 to 1.7.6-3 (518 bytes)
bioperl (1.7.6-2) unstable; urgency=medium * Team upload. * Add breaks: roary <= 3.12.0+dfsg-2 -- Michael R. Crusoe <email address hidden> Wed, 27 Nov 2019 11:48:16 +0100
Available diffs
- diff from 1.7.6-1 to 1.7.6-2 (471 bytes)
bioperl (1.7.6-1) unstable; urgency=medium
* Team upload.
* Fix autopkgtests:
Don't run the `use.t` autopkgtest, there is no longer a Bio::Perl module
scripts/ → bin/
No Build.PL anymore, skip it
* Add missing colon in closes line.
* Set fields Upstream-Name, Upstream-Contact in debian/copyright.
* Set upstream metadata fields: Repository-Browse.
* Remove obsolete fields Name, Contact from debian/upstream/metadata.
* New upstream release.
* No longer conflicts with libbio-perl-run-perl (Closes: #921495)
* Fixed some spelling typos
-- Michael R. Crusoe <email address hidden> Tue, 26 Nov 2019 11:22:39 +0100
Available diffs
- diff from 1.7.5-1 to 1.7.6-1 (40.2 KiB)
bioperl (1.7.5-1) unstable; urgency=medium * New upstream version * Packaged with routine-update script * debhelper-compat 12 * Standards-Version: 4.4.0 -- Steffen Moeller <email address hidden> Sat, 27 Jul 2019 17:55:00 +0200
Available diffs
- diff from 1.7.4-1 to 1.7.5-1 (113.4 KiB)
bioperl (1.7.4-1) unstable; urgency=medium
* New upstream version
* Drop broken uversionmangle from watch file
* debhelper 12
* Standards-Version: 4.3.0
* Build-Depends: libyaml-perl, libtest-requiresinternet-perl
* Drop manual renaming and permission fixes which are not needed
any more
* More fixes to Perl path in examples
-- Andreas Tille <email address hidden> Tue, 05 Feb 2019 22:17:53 +0100
Available diffs
- diff from 1.7.2-3 to 1.7.4-1 (5.1 MiB)
bioperl (1.7.2-3) unstable; urgency=medium * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright * Remove trailing whitespace in debian/rules * Fix Perl interpreter path * Fix URL for source download -- Andreas Tille <email address hidden> Sun, 28 Oct 2018 00:46:56 +0200
Available diffs
- diff from 1.7.2-2 to 1.7.2-3 (3.0 KiB)
bioperl (1.7.2-2) unstable; urgency=medium
* Team upload
[ gregor herrmann ]
* Fix autopkgtests. The smoke tests need a `perl Build.PL' beforehand.
And we need some additional files for some tests. (Closes: #871727)
* debian/control: move libmodule-build-perl to Build-Depends from Build-
Depends-Indep. It is needed during clean.
[ Andreas Tille ]
* Standards-Version: 4.1.2
* Secure URI in watch file
-- gregor herrmann <email address hidden> Wed, 13 Dec 2017 21:59:15 +0100
Available diffs
- diff from 1.7.1-3 to 1.7.2-2 (194.8 KiB)
- diff from 1.7.2-1 to 1.7.2-2 (1.2 KiB)
bioperl (1.7.2-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.1.1 -- Andreas Tille <email address hidden> Sun, 03 Dec 2017 18:55:57 +0100
bioperl (1.7.1-3) unstable; urgency=medium
* Team upload
[ Carnë Draug ]
* Declare missing dependency on libtest-most-perl used by
Bio::Root::Test
[ Andreas Tille ]
* Build-Depends: rename
Closes: #873745
* Standards-Version: 4.1.0 (no changes needed)
-- Carnë Draug <email address hidden> Wed, 30 Aug 2017 14:56:14 +0100
Available diffs
- diff from 1.7.1-2 to 1.7.1-3 (887 bytes)
bioperl (1.7.1-2) unstable; urgency=medium [ gregor herrmann ] * Add debian/tests/pkg-perl/use-name to fix an autopkgtest failure * Add t/Perl.t and t/Species.t to debian/tests/pkg-perl/smoke-skip -- Andreas Tille <email address hidden> Sun, 15 Jan 2017 08:50:21 +0100
Available diffs
- diff from 1.6.924-5 to 1.7.1-2 (393.6 KiB)
- diff from 1.7.1-1 to 1.7.1-2 (430 bytes)
bioperl (1.7.1-1) unstable; urgency=medium
[ Charles Plessy ]
* New upstream release.
Closes: #846579
* debian/patches deleted (applied upstream).
* debian/docs: correct name of README file.
* debian/control: Use secure VCS browser URL.
[ Andreas Tille ]
* d/watch: uversionmangle to get proper version number
* debhelper 10
-- Andreas Tille <email address hidden> Mon, 05 Dec 2016 22:05:08 +0100
bioperl (1.6.924-5) unstable; urgency=medium * Testsuite: autopkgtest-pkg-perl * Move packaging from SVN to Git -- Andreas Tille <email address hidden> Wed, 29 Jun 2016 09:20:14 +0200
Available diffs
- diff from 1.6.924-4 to 1.6.924-5 (692 bytes)
bioperl (1.6.924-4) unstable; urgency=medium
* cme fix dpkg-control (Needed several manual postprocessing since cme
has the habit to move comments to the end of a section)
* Fix FTBFS with Perl 5.24 by applying upstream patch
Closes: #825429
* Remove unused paragraph in d/copyright
-- Andreas Tille <email address hidden> Sun, 05 Jun 2016 08:50:03 +0200
Available diffs
- diff from 1.6.924-3 to 1.6.924-4 (3.2 KiB)
bioperl (1.6.924-3) unstable; urgency=medium
* Fix FTBFS with perl 5.22
Closes: #796259
* Standards-Version: 3.9.6
-- Andreas Tille <email address hidden> Thu, 20 Aug 2015 23:11:32 +0200
Available diffs
- diff from 1.6.924-2 to 1.6.924-3 (653 bytes)
bioperl (1.6.924-2) unstable; urgency=medium
* d/control: add perl-modules for perl 5.22 transition
(Closes: #790305).
-- Olivier Sallou <email address hidden> Mon, 29 Jun 2015 09:05:22 +0200
Available diffs
- diff from 1.6.924-1 to 1.6.924-2 (533 bytes)
bioperl (1.6.924-1) unstable; urgency=medium * New upstream release. -- Charles Plessy <email address hidden> Sun, 13 Jul 2014 19:16:01 +0900
Available diffs
- diff from 1.6.923-1 to 1.6.924-1 (300.5 KiB)
bioperl (1.6.923-1) unstable; urgency=medium
* New upstream release.
* Does not need non-free libmath-random-perl anymore.
* Build-depend on libmodule-build-perl (>= 0.420000). Despite Lintian's
warning that it is useless, the package does not build without.
* Conforms to Policy version 3.9.5.
-- Charles Plessy <email address hidden> Sat, 18 Jan 2014 11:41:11 +0900
Available diffs
- diff from 1.6.922-1 to 1.6.923-1 (64.9 KiB)
bioperl (1.6.922-1) unstable; urgency=low
* New upstream release.
* Replaces and Breaks grinder (<< 0.5.3-3~) because of overlaping contents.
Closes: #722910
* Stop Replacing and Breaking bioperl ( << 1.6.9 ): not needed anymore.
-- Charles Plessy <email address hidden> Sun, 22 Sep 2013 13:39:48 +0900
Available diffs
- diff from 1.6.901-4 to 1.6.922-1 (1.3 MiB)
bioperl (1.6.920-1) unstable; urgency=low * New upstream release (Closes: #720776) * Adjusted Depends and Recommends (4 additions). * Removed patch ‘fix_berkeleydb3_temp_file_creation’ applied upstream. * Use canonical VCS URLs. -- Charles Plessy <email address hidden> Sun, 08 Sep 2013 20:56:00 +0900
bioperl (1.6.901-4) unstable; urgency=low * debian/upstream: Add additional citation data [ Olivier Sallou ] * add missing dependency * Switch to standards 3.9.4 -- Andreas Tille <email address hidden> Tue, 08 May 2012 23:06:09 +0200
Available diffs
- diff from 1.6.901-3 to 1.6.901-4 (1.5 KiB)
bioperl (1.6.901-3) unstable; urgency=low
* Team upload.
[ Olivier Sallou ]
+ add patch fix_berkeleydb3_temp_file_creation (Closes: #661793).
Fixed upstream for next release.
* debian/control: update Standards version
* debian/copyright: update Format to latest officiel URL v1.0
* debian/patches/fix_examples_perl_location: fix wrong perl location
* debian/rules: fix file access rights in dh_install
-- Olivier Sallou <email address hidden> Fri, 02 Mar 2012 11:10:36 +0100
Available diffs
bioperl (1.6.901-2) unstable; urgency=low
[ Luca Capello ]
* debian/control:
+ add Recommends: to some libraries already in libbio-perl-perl's
for binaries showing help output (Closes: #650412).
* debian/README.Debian:
+ new file with a more detailed explanation about the above.
[ Andreas Tille ]
* debian/source/format: 3.0 (quilt)
* Added myself to Uploaders
-- Andreas Tille <email address hidden> Wed, 14 Dec 2011 09:11:41 +0100
bioperl (1.6.901-1) unstable; urgency=low * New upstream release. * Point debian/watch to search.cpan.org. * Build using dh and overrides: - Use Debhelper 8 (debian/rules, debian/control). - Simplified debian/rules. * Split into libbio-perl-perl, as discussed with the Debian Perl team. (debian/control, debian/bioperl.install, debian libbio-perl-perl.install) * debian/control: - Incremented Standards-Version to reflect conformance with Policy 3.9.2. No other changes needed. - Vcs-Browser URL made redirectable to viewvc. - Removed useless ‘svn’ in the Vcs-Svn URL. -- Charles Plessy <email address hidden> Fri, 17 Jun 2011 13:51:18 +0900
bioperl (1.6.1-2) unstable; urgency=low
* Removed bibliographic information from the long description
(debian/control).
* Incremented Standards-Version to reflect conformance with Policy 3.8.4
(debian/control, no changes needed).
* Build-depends on libxml-sax-expatxs-perl to avoid downloading DTDs during
the tests and therefore fail when network is not available
(debian/control, Closes: #562442).
* Depend on the ${misc:Depends} substvar (debian/control).
-- Charles Plessy <email address hidden> Fri, 26 Feb 2010 23:52:23 +0900
bioperl (1.6.1-1) unstable; urgency=low
* New upstream release with new features and many corrections in the
test suite (Closes: #533976).
* debian/rules: trigger network tests with DEB_MAINTAINER_MODE.
* debian/control:
- Build-depend on perl-modules >= 5.10.1 to have ExtUtils::Manifest 1.52 or
higher, and on libtest-pod-perl.
- Added liblist-moreutils-perl, libspreadsheet-writeexcel-perl,
libsvg-perl, and libxml-simple-perl, libdbd-pg-perl, libdbd-mysql-perl,
libdbd-sqlite3-perl to build and package dependencies (needed by some
components of Bioperl, and therefore for the tests).
-- Charles Plessy <email address hidden> Wed, 30 Sep 2009 18:56:42 +0900
bioperl (1.6.0-3) unstable; urgency=low
[ David Paleino ]
* Removed myself from Uploaders
[ Charles Plessy ]
* debian/control:
- Added libdata-stag-perl in bioperl’s Depends field, since it is
required in Build.PL.
- Added libxml-simple-perl in bioperl’s Recommends and Build-Depends
fields, since they are listed in DEPENDENCIES.
- Incremented Standards-Version to reflect conformance with Policy 3.8.3
(no changes needed).
* Collected some informations in debian/upstream-metadata.yaml.
-- Charles Plessy <email address hidden> Fri, 18 Sep 2009 20:23:51 +0900
bioperl (1.6.0-2) unstable; urgency=low
* Removed patch system (not used):
- removed instuctions in debian/rules;
- removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
- uncommented test command in debian/rules;
- uncommented previously missing build-dependencies in debian/control.
- Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
instead of rmdir in debian/rules (LP: #324001).
-- Charles Plessy <email address hidden> Tue, 10 Mar 2009 07:19:11 +0100
bioperl (1.5.2.102-3) unstable; urgency=low
* debian/control:
- Removed MIA Matt Hope (dopey) from the Uploaders field.
Thank you for your work, Matt. I hope you are doing well.
- Downgraded some recommended package to the 'Suggests' priority,
according to the following discussion on Upstream's mail list.
http://bioperl.org/pipermail/bioperl-l/2008-March/027379.html
(Closes: #448890)
* debian/copyright converted to machine-readable format.
-- Charles Plessy <email address hidden> Tue, 18 Mar 2008 14:44:57 +0900
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