Ubuntu
alien-hunter package

alien-hunter 1.7-1 source package in Ubuntu

Changelog

alien-hunter (1.7-1) unstable; urgency=low

  * Initial release (Closes: #550954)
 -- Ubuntu Archive Auto-Sync <email address hidden>   Thu,  19 Nov 2009 20:37:15 +0000

Upload details

Uploaded by:
Ubuntu Archive Auto-Sync
Uploaded to:
Lucid
Original maintainer:
Debian Med
Architectures:
all
Section:
science
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Precise release universe science

Builds

Lucid: [FULLYBUILT] i386

Downloads

File Size SHA-256 Checksum
alien-hunter_1.7.orig.tar.gz 25.5 KiB fae4d3f31166e69acc7119c37a34b69ca6aad9a981c454c42d3c0773456e783f
alien-hunter_1.7-1.diff.gz 3.6 KiB 58625b7b9af62bddbb6ab19472efede32029f524cb1f5cb4c717fd5ed9cc93d3
alien-hunter_1.7-1.dsc 1.3 KiB 2016ba9a6abb3ebd3f4136762e60457200a3c8d0b2ba28e634e034c5dbae1356

View changes file

Binary packages built by this source

alien-hunter: Interpolated Variable Order Motifs to identify horizontally acquired DNA

 Alien_hunter is an application for the prediction of putative
 Horizontal Gene Transfer (HGT) events with the implementation of
 Interpolated Variable Order Motifs (IVOMs). An IVOM approach
 exploits compositional biases using variable order motif distributions
 and captures more reliably the local composition of a sequence compared
 to fixed-order methods. Optionally the predictions can be parsed into a
 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection
 framework, to optimize the localization of the boundaries of the
 predicted regions. The predictions (embl format) can be automatically
 loaded into Artemis genome viewer freely available at:
 http://www.sanger.ac.uk/Software/Artemis/.