Change log for arb package in Ubuntu

arb (6.0.6-7build3) noble; urgency=medium

  * No-change rebuild for CVE-2024-3094

 -- Steve Langasek <email address hidden>  Sun, 31 Mar 2024 17:40:38 +0000

Available diffs

• diff from 6.0.6-7build2 to 6.0.6-7build3 (297 bytes)

arb (6.0.6-7build2) noble; urgency=medium

  * No-change rebuild against libxt6t64

 -- Steve Langasek <email address hidden>  Sat, 09 Mar 2024 00:46:41 +0000

Available diffs

• diff from 6.0.6-7 (in Debian) to 6.0.6-7build2 (541 bytes)
• diff from 6.0.6-7build1 to 6.0.6-7build2 (291 bytes)

arb (6.0.6-7build1) noble; urgency=medium

  * No-change rebuild against libtirpc3t64

 -- Steve Langasek <email address hidden>  Thu, 29 Feb 2024 09:19:50 +0000

Available diffs

• diff from 6.0.6-7 (in Debian) to 6.0.6-7build1 (503 bytes)

arb (6.0.6-7) unstable; urgency=medium

  * Team upload.
  * d/control: revert to Debhelper compat 11
  * Updated source lintian-overrides
  * d/upstream/metadata: add bug and source respository information.
  * d/copyright: be explicit that this package is not part of Debian

 -- Michael R. Crusoe <email address hidden>  Fri, 18 Aug 2023 13:17:20 +0200

Available diffs

• diff from 6.0.6-5 to 6.0.6-7 (5.5 KiB)

arb (6.0.6-5) unstable; urgency=medium

  * Team Upload.
  [ Jelmer Vernooij ]
  * Trim trailing whitespace.
  * Use secure copyright file specification URI.

  [ Andreas Tille ]
  * Standards-Version: 4.2.1
  * Remove trailing whitespace in debian/rules
  * Do not parse d/changelog
  * Fix description
    Closes: #926017
  * d/watch: (FIXME) Add location of new upstream releases as comment
  
  [ Elmar Pruesse ]
  * Fix stripping of static libs

  [ Steffen Möller ]
  * Update metadata with ref to conda
  * Update metadata - updated bio.tools ref to lowercase

  [ Nilesh Patra ]
  * Add patch to fix FTBFS with new glibc, add flags to
    use libtirpc-dev (Closes: #998237)
  * Add B-D on libtirpc-dev

 -- Nilesh Patra <email address hidden>  Sat, 06 Nov 2021 02:25:36 +0530

Available diffs

• diff from 6.0.6-4ubuntu1 (in Ubuntu) to 6.0.6-5 (5.3 KiB)

arb (6.0.6-4ubuntu1) hirsute; urgency=medium

  * Fix FTBFS
    - d/patches/91_include_tirpc.patch: include tirpc headers and lib.

 -- Tiago Stürmer Daitx <email address hidden>  Tue, 12 Jan 2021 19:46:52 +0000

Available diffs

• diff from 6.0.6-4build1 to 6.0.6-4ubuntu1 (1.2 KiB)

arb (6.0.6-4build1) focal; urgency=medium

  * No-change rebuild for libgcc-s1 package name change.

 -- Matthias Klose <email address hidden>  Sun, 22 Mar 2020 16:33:23 +0100

Available diffs

• diff from 6.0.6-4 (in Debian) to 6.0.6-4build1 (305 bytes)

arb (6.0.6-4) unstable; urgency=medium

  * Fix symlink
    Closes: #903921
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.1.5

 -- Andreas Tille <email address hidden>  Tue, 17 Jul 2018 15:47:02 +0200

Available diffs

• diff from 6.0.6-3 to 6.0.6-4 (1.1 KiB)

arb (6.0.6-3) unstable; urgency=medium

  * Add Indonesian debconf translation
    Closes: #862913
  * Standards-Version: 4.1.2

 -- Andreas Tille <email address hidden>  Tue, 19 Dec 2017 11:38:55 +0100

Available diffs

• diff from 6.0.6-2 to 6.0.6-3 (1.3 KiB)

arb (6.0.6-2) unstable; urgency=medium

  * Team upload
  * Moved packaging to git
  * d/control: transfig → fig2dev (Closes: #866151)
  * do not create MAFFT symlinks (Closes: #857283)
  * bump standards version

 -- Fabian Klötzl <email address hidden>  Tue, 12 Sep 2017 17:32:11 +0200

Available diffs

• diff from 6.0.6-1 to 6.0.6-2 (1.2 KiB)

arb (6.0.6-1) unstable; urgency=medium

  * New upstream version
  * Update Swedish debconf translation (Thanks to Martin Bagge
    <email address hidden>)
    Closes: #769879
  * Add Catalan debconf templates translation (Thanks to Innocent De Marchi
    <email address hidden>)
    Closes: #788004
  * debhelper 10
  * d/watch: version=4
  * d/rules: hardening=+all (but no effect :-()
  * Delete menu file
  * Install arb_CHANGES.txt as upstream changelog

 -- Andreas Tille <email address hidden>  Wed, 07 Dec 2016 10:34:07 +0100

Available diffs

• diff from 6.0.3-2 to 6.0.6-1 (20.9 KiB)

arb (6.0.3-2) unstable; urgency=medium

  * Team upload.
  * Fix building with GCC 6.
    - Use correct return type in method definition.
    - Allow for newer __cplusplus versions.
    Closes: #834170
  * Use secure Vcs-Browser. 
  * Do not depend on perl-modules.
  * Bump Standards-Version.

 -- Sascha Steinbiss <email address hidden>  Sat, 17 Sep 2016 10:34:18 +0000

Available diffs

• diff from 6.0.3-1 to 6.0.3-2 (1.5 KiB)

arb (6.0.3-1) unstable; urgency=medium

  * New upstream version
  * Applied all l10n patches - thanks a lot for the great l10n team
    for pushing this
  * Debconf templates and debian/control reviewed by the debian-l10n-
    english team as part of the Smith review project. Closes: #761942
  * [Debconf translation updates]
  * Danish (Joe Hansen).  Closes: #764869
  * Dutch; (Frans Spiesschaert).  Closes: #765088
  * Russian (Yuri Kozlov).  Closes: #765096
  * Portuguese (Américo Monteiro).  Closes: #761503
  * Danish (Joe Hansen).  Closes: #765865
  * Czech (Michal Simunek).  Closes: #766600
  * Italian (Daniele Forsi).  Closes: #766684
  * German (Chris Leick).  Closes: #766689
  * French (Steve Petruzzello).  Closes: #766728
  * Catalan; (Innocent De Marchi).  Closes: #766855
  * Japanese (Hideki Yamane (Debian-JP)).  Closes: #767247
  * extra linker flag proposed by Tim Booth
  * Lintian override to avoid false positives
  * cme fix dpkg-control
  * spelling+lintian fixes in d/copyright

 -- Andreas Tille <email address hidden>  Thu, 10 Dec 2015 12:26:14 +0100

Available diffs

• diff from 6.0.2-2 to 6.0.3-1 (18.9 KiB)

arb (6.0.2-2) unstable; urgency=medium

  [ Elmar Pruesse ]
   * Add Portugese debconf translation (thanks to Américo Monteiro 
     <email address hidden> for the patch)
     Closes: #761503
   * Add Russian debconf translation (thanks to Yuri Kozlov 
     <email address hidden> for the patch)
     Closes: #761616
   * debian/arb_CHANGELOG.txt -> debian/changelog (fix lintian complaint)

  [ Andreas Tille ]
  * Skip compiler version check at all
    Closes: #793187

 -- Andreas Tille <email address hidden>  Wed, 22 Jul 2015 22:49:16 +0200

Available diffs

• diff from 6.0.2-1 to 6.0.2-2 (3.1 KiB)

arb (6.0.2-1) unstable; urgency=medium


  [ Andreas Tille ]
  * New upstream version
    Closes: #741890
  * debian/upstream -> debian/upstream/metadata
  * debian/control:
     - Build-Depends: added libglib2.0-dev
     - Depends: added mafft, mrbayes
  * debian/rules
     - Add explicite --remove-section=.comment option to manual strip call
  * cme fix dpkg-control
  * arb-common.dirs: Do not create unneeded lintian dir
  * Add turkish debconf translation (thanks for the patch to Mert Dirik
    <email address hidden>)
    Closes: #757497

  [ Elmar Pruesse ]
  * patches removed:
     - 10_config.makefiles.patch,
       80_no_GL.patch
         removed in favor of creating file from config.makefile.template via 
         sed in debian/control
     - 20_Makefile_main.patch
         merged upstream
     - 21_Makefiles.patch
         no longer needed
     - 30_tmpfile_CVE-2008-5378.patch: 
         merged upstream
     - 50_fix_gcc-4.8.patch:
         merged upstream
     - 40_add_libGLU.patch:
         libGLU not needed for arb_ntree)
     - 60_use_debian_packaged_raxml.patch:
         merged upstream
     - 70_hardening.patch
         merged upstream
     - 72_add_math_lib_to_linker.patch
         does not appear to be needed
  * patches added:
     - 10_upstream_r12793__show_db_load_progress:
         backported patch showing progress while ARB is loading a database
         (needed as indicator/splash screen while ARB is launching)
     - 20_upstream_r12794__socket_permissions:
         backported security fix
     - 30_upstream_r12814__desktop_keywords:
         backported add keywords to desktop (fixes lintian warning)
     - 40_upstream_r12815__lintian_spelling:
         backported fix for lintian reported spelling errors
     - 50_private_nameservers
         change configuration to put nameservers into users home dirs
         (avoids need for shared writeable directory)
     - 60_use_debian_phyml
         use phyml from debian package for both interfaces in ARB
  * debian/rules:
     - create config.makefile from override_dh_configure target
     - use "make tarfile" in override_dh_install
     - remove extra cleaning not needed for ARB 6
     - use "dh_install --list-missing" to avoid missing files
     - added override_dh_fixperms target
  * debian/control:
     - added libarb-dev package
     - Depends: added phyml, xdg-utils
     - Suggests: removed phyml
     - fix lintian duplicate-short-description (new descriptions)
  * debian/*.install:
     - "unrolled" confusing globbing to select files
     - pick files from debian/tmp
     - moved all config files to /etc/arb
  * debian/arb-common.templates: updated
  * scripts:
     - removed arb-add-pt-server
     - launch-wrapper: 
       - only add demo.arb to newly created $ARBUSERDATA
       - pass commandline arguments through bin/arb wrapper
     - preinst: removing old PT server index files on upgrade from 5.5*
     - postinst: set setgid on shared PT dir
  * rewrote arb.1 manfile
  * added file icon for ARB databases
  * using upstream arb_tcp.dat

 -- Elmar Pruesse <email address hidden>  Tue, 02 Sep 2014 15:15:06 +0200

Available diffs

• diff from 5.5-5ubuntu1 (in Ubuntu) to 6.0.2-1 (6.9 MiB)

arb (5.5-5ubuntu1) trusty; urgency=medium

  * Rebuild against glew 1.10.
  * Fix build with recent GL (?), Motif (?).
 -- Matthias Klose <email address hidden>   Tue, 07 Jan 2014 09:05:19 +0100

Available diffs

• diff from 5.5-5 (in Debian) to 5.5-5ubuntu1 (704 bytes)

arb (5.5-5) unstable; urgency=low


  * build-depend on libtiff-dev instead of libtiff4-dev (thanks for the
    patch to Logan Rosen <email address hidden>)
    Closes: #729769
  * cme fix dpkg-control
  * cme fix dpkg-copyright
  * canonical Vcs fields
  * debian/patches/hardening.patch: Propagate hardening options

 -- Andreas Tille <email address hidden>  Wed, 04 Dec 2013 09:24:14 +0100

Available diffs

• diff from 5.5-4ubuntu1 (in Ubuntu) to 5.5-5 (3.7 KiB)

arb (5.5-4ubuntu1) trusty; urgency=low

  * Build-depend on libtiff-dev rather than libtiff4-dev.
 -- Logan Rosen <email address hidden>   Sat, 16 Nov 2013 18:50:17 -0500

Available diffs

• diff from 5.5-4 (in Debian) to 5.5-4ubuntu1 (612 bytes)

arb (5.5-4) unstable; urgency=low


  * Build-Depends: libglew-dev instead of libglew1.5-dev
    Closes: #714327

 -- Andreas Tille <email address hidden>  Fri, 28 Jun 2013 09:42:35 +0200

Available diffs

• diff from 5.5-3ubuntu1 (in Ubuntu) to 5.5-4 (634 bytes)

arb (5.5-3ubuntu1) saucy; urgency=low

  * Merge from Debian unstable (LP: #1194864). Remaining changes:
    - Transition to libglew-dev (1.8)

Available diffs

• diff from 5.3-4ubuntu2 to 5.5-3ubuntu1 (25.7 KiB)
• diff from 5.5-2ubuntu1 to 5.5-3ubuntu1 (1.6 KiB)

arb (5.5-2ubuntu1) saucy; urgency=low

  * Merge from Debian unstable (LP: #1194864). Remaining changes:
    - Transition to libglew-dev (1.8)

Available diffs

• diff from 5.3-4ubuntu2 to 5.5-2ubuntu1 (24.8 KiB)

arb (5.3-4ubuntu2) quantal; urgency=low

  * Fix build failure on ARM.
 -- Matthias Klose <email address hidden>   Sat, 13 Oct 2012 16:24:57 +0200

Available diffs

• diff from 5.3-4ubuntu1 to 5.3-4ubuntu2 (707 bytes)

arb (5.3-4ubuntu1) quantal; urgency=low

  * Transition to libglew-dev (1.8)
 -- Dmitrijs Ledkovs <email address hidden>   Sun, 09 Sep 2012 01:22:54 +0100

Available diffs

• diff from 5.3-4 (in Debian) to 5.3-4ubuntu1 (639 bytes)

arb (5.3-4) unstable; urgency=low


  * debian/upstream: Add citations
  * debian/control:
     - Build-Depends: libpng-dev instead of libpng12-dev
       Closes: #662270
     - Standards-Version: 3.9.3 (no changes needed)
  * debian/po/nl.po: Add Dutch translation of debconf templates
    Thanks for the translation to Jeroen Schot <email address hidden>
    Closes: #654763
  * debian/patches/30_Makefile_main:
     - Enable gcc-4.7 as well
       Closes: #682404
     - Enable using hardening flags
  * debian/patches/gcc-4.7.patch: Fix gcc-4.7 build issue
  * debhelper 9 (control+compat)
  * debian/rules:
     - Fixed clean target
     - propagate hardening flags

 -- Andreas Tille <email address hidden>  Thu, 26 Jul 2012 12:15:21 +0200

arb (0.0.20071207.1-7ubuntu1) karmic; urgency=low

  [ Scott Kitterman ]
  * Drop kaffe from build-depends so it can be removed
  * Replace the long ago removed free-java-sdk with default-jdk in
    build-depends
  * Add GCC 4.4.1 to allowed GCC versions in debian/patches/30_Makefile_main
  * Add debian/patches/gcc4.4_build.patch to fix build with GCC 4.4
    - Add #include <cstdio> in SL/FILE_BUFFER/FileBuffer.cxx

  [ Matthias Klose ]
  * Fix build failures with glibc-2.10.

 -- Matthias Klose <email address hidden>   Sun, 25 Oct 2009 09:12:01 +0100

Available diffs

• diff from 0.0.20071207.1-7 to 0.0.20071207.1-7ubuntu1 (5.5 KiB)

arb (0.0.20071207.1-7) unstable; urgency=low

  * Bumped debhelper to version 7
     -> dh_clean -k -> dh_clean; dh_prep
  * Standards-Version: 3.8.1 (no changes needed)
  * Enhanced package description of arb-common and arb-doc
    Closes: #517710
  * Added Portuguese translation for debconf messages (thanks to
    Traduz <email address hidden>)
    Closes: #516958
  * Added Depends: ${misc:Depends} to all packages

Available diffs

• diff from 0.0.20071207.1-5 to 0.0.20071207.1-7 (6.5 KiB)

arb (0.0.20071207.1-5) unstable; urgency=low

  * Fix tempfile issues in upstream scripts
    Closes: #496396
  * Fix arb name server location in config file (Thanks to
    Felipe Figueiredo <email address hidden>)
    Closes: #495650
  * arb-common.config: Make sure that config file will not fail
    when NIS is used

Available diffs

• diff from 0.0.20071207.1-2 to 0.0.20071207.1-5 (16.3 KiB)

arb (0.0.20071207.1-2) unstable; urgency=low

  * Added XS-Autobuild: yes to enable autobuilding
  * Slightly enhanced description

arb (0.0.20050526-7) unstable; urgency=low

  * arb-common recommends arb
  * Added Build-Depends: g++
  * Because there is no sign that this version shows the behaviour
    reported in #325640 against the former version and the bug reporter
    did not respond to any request I decide to close this bug. Feel
    free to reopen if it seems necessary.
    Clsoes: #325640