augustus 3.4.0+dfsg2-3 source package in Ubuntu
Changelog
augustus (3.4.0+dfsg2-3) unstable; urgency=medium * Fix watchfile to work with recent GitHub link structure. -- Sascha Steinbiss <email address hidden> Tue, 28 Sep 2021 22:14:24 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| augustus_3.4.0+dfsg2-3.dsc | 2.3 KiB | dfbd071257524b96e0f7c86626f7113e5c74855749952e312cf9f6e6f227c394 |
| augustus_3.4.0+dfsg2.orig.tar.xz | 141.1 MiB | 37c8a523ed948d63291de219205c8e7ac260e27a121b68a64010f38146cf11fe |
| augustus_3.4.0+dfsg2-3.debian.tar.xz | 18.7 KiB | da668665929a2f7c8ec3867eebeb443e18c0effcca0742f86d5d2f8b760122ae |
Available diffs
- diff from 3.4.0+dfsg2-2 to 3.4.0+dfsg2-3 (532 bytes)
No changes file available.
Binary packages built by this source
- augustus: gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences
that is based on a generalized hidden Markov model (HMM), a probabilistic
model of a sequence and its gene structure. After learning gene structures
from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new
sequence and annotates it with the regions of identified genes. External hints,
e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide
and improve the gene finding process. The result is the set of most likely gene
structures that comply with all given user constraints, if such gene
structures exist.
AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts
to train custom models using annotated genomes.
- augustus-data: data files for AUGUSTUS
This package contains pre-trained species models and other required
architecture-independent data files for the AUGUSTUS gene finder. These are
needed to identify gene structures in these or related organisms.
- augustus-dbgsym: debug symbols for augustus
- augustus-doc: documentation files for AUGUSTUS
This package contains documentation for AUGUSTUS: a comprehensive manual-style
README both for AUGUSTUS in general as well as for its comparative gene
prediction (cgp) mode, as well as a HTML tutorial.
