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bamtools package

bamtools 2.4.0+dfsg-3 source package in Ubuntu

Changelog

bamtools (2.4.0+dfsg-3) unstable; urgency=medium

  * allow to read bam files on big endian systems (Closes: #807979)
  * added sam_spec_example.sam and sam_spec_example.bam files
  * activated cmake testing framework abd added simple tests

 -- Dominique Belhachemi <email address hidden>  Sun, 20 Dec 2015 15:41:42 -0500

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Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
bamtools_2.4.0+dfsg-3.dsc 2.2 KiB b66193055380314bf29a45ca794daec6b2f991f1f5d9e4564f39c83fe9a64b4d
bamtools_2.4.0+dfsg.orig.tar.xz 153.0 KiB 1f66a4971e70eac5c4aea6ee0c3e95d42af004b9578642b39812e7a552ea561d
bamtools_2.4.0+dfsg-3.debian.tar.xz 9.4 KiB 5f4b6ab6d40cfe79d0cc50f3a22bd3547f9b3beaaf96fa56a73576d3267780b8

Available diffs

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Binary packages built by this source

bamtools: toolkit for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the bamtools command-line toolkit.
 .
 Available bamtools commands:
  convert Converts between BAM and a number of other formats
  count Prints number of alignments in BAM file(s)
  coverage Prints coverage statistics from the input BAM file
  filter Filters BAM file(s) by user-specified criteria
  header Prints BAM header information
  index Generates index for BAM file
  merge Merge multiple BAM files into single file
  random Select random alignments from existing BAM file(s), intended more
           as a testing tool.
  resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
  revert Removes duplicate marks and restores original base qualities
  sort Sorts the BAM file according to some criteria
  split Splits a BAM file on user-specified property, creating a new BAM
           output file for each value found
  stats Prints some basic statistics from input BAM file(s)

bamtools-dbgsym: debug symbols for package bamtools

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the bamtools command-line toolkit.
 .
 Available bamtools commands:
  convert Converts between BAM and a number of other formats
  count Prints number of alignments in BAM file(s)
  coverage Prints coverage statistics from the input BAM file
  filter Filters BAM file(s) by user-specified criteria
  header Prints BAM header information
  index Generates index for BAM file
  merge Merge multiple BAM files into single file
  random Select random alignments from existing BAM file(s), intended more
           as a testing tool.
  resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
  revert Removes duplicate marks and restores original base qualities
  sort Sorts the BAM file according to some criteria
  split Splits a BAM file on user-specified property, creating a new BAM
           output file for each value found
  stats Prints some basic statistics from input BAM file(s)

libbamtools-dev: C++ API for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the developers API package.

libbamtools2.4.0: dynamic library for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the runtime library.

libbamtools2.4.0-dbgsym: debug symbols for package libbamtools2.4.0

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the runtime library.