biobambam2 2.0.184+ds-1 source package in Ubuntu
Changelog
biobambam2 (2.0.184+ds-1) unstable; urgency=medium
* d/t/run-unit-test: skip bamsormadup test on i386; allows substancial
autopkgtest on that architecture as well.
* New upstream version
* Standards-Version: 4.6.1 (routine-update)
-- Étienne Mollier <email address hidden> Fri, 07 Oct 2022 21:23:51 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| biobambam2_2.0.184+ds-1.dsc | 2.2 KiB | 6bcb5f50d0f7863c699d6e51c4bcd0ebfc8bc20af5f3ba7af20a515bf5251ffb |
| biobambam2_2.0.184+ds.orig.tar.xz | 243.1 KiB | 8f47a60081eba1b28530378d94f98452dd0c187d326fddcff617898f4f3582c4 |
| biobambam2_2.0.184+ds-1.debian.tar.xz | 1008.1 KiB | 4c73dc9323f5da1993e127addeb0e0e11ab4e0b09285dd15ff3b10368a6ab38c |
Available diffs
- diff from 2.0.183+ds-1 to 2.0.184+ds-1 (3.2 KiB)
No changes file available.
Binary packages built by this source
- biobambam2: tools for early stage alignment file processing
This package contains some tools for processing BAM files, including
.
bamsormadup: parallel sorting and duplicate marking
bamcollate2: reads BAM and writes BAM reordered such that alignment
or collated by query name
bammarkduplicates: reads BAM and writes BAM with duplicate alignments
marked using the BAM flags field
bammaskflags: reads BAM and writes BAM while masking (removing) bits
from the flags column
bamrecompress: reads BAM and writes BAM with a defined compression
setting. This tool is capable of multi-threading.
bamsort: reads BAM and writes BAM resorted by coordinates or
query name
bamtofastq: reads BAM and writes FastQ; output can be collated
or uncollated by query name
- biobambam2-dbgsym: debug symbols for biobambam2
