biobambam2 2.0.185+ds-1 source package in Ubuntu
Changelog
biobambam2 (2.0.185+ds-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.6.2 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit. * d/copyright: update copyright year. * d/control: build depend on libxerces-c-dev; provide blastnxmltobam. -- Étienne Mollier <email address hidden> Sun, 01 Jan 2023 22:29:25 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Noble | release | universe | misc | |
| Mantic | release | universe | misc | |
| Lunar | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| biobambam2_2.0.185+ds-1.dsc | 2.2 KiB | b8e0de797cebd61826de4d40724d09d30098b9990f4b76cc99859cc5abc8a85c |
| biobambam2_2.0.185+ds.orig.tar.xz | 243.2 KiB | 90cc8328f4e78771cf87cc918d890d12073cbbfbcad7cf94e35b655e3ec2747a |
| biobambam2_2.0.185+ds-1.debian.tar.xz | 1008.2 KiB | 69827168e8c2552f9b716eb001a6af877a16e1aff7e2a321fe71f4ed9393cfe0 |
Available diffs
- diff from 2.0.184+ds-1 to 2.0.185+ds-1 (1.7 KiB)
No changes file available.
Binary packages built by this source
- biobambam2: tools for early stage alignment file processing
This package contains some tools for processing BAM files, including
.
bamsormadup: parallel sorting and duplicate marking
bamcollate2: reads BAM and writes BAM reordered such that alignment
or collated by query name
bammarkduplicates: reads BAM and writes BAM with duplicate alignments
marked using the BAM flags field
bammaskflags: reads BAM and writes BAM while masking (removing) bits
from the flags column
bamrecompress: reads BAM and writes BAM with a defined compression
setting. This tool is capable of multi-threading.
bamsort: reads BAM and writes BAM resorted by coordinates or
query name
bamtofastq: reads BAM and writes FastQ; output can be collated
or uncollated by query name
- biobambam2-dbgsym: debug symbols for biobambam2
