bowtie2 2.3.3.1-1 source package in Ubuntu
Changelog
bowtie2 (2.3.3.1-1) unstable; urgency=medium * Update Files-Excluded list in d/copyright * Bump Standards-Version to 4.1.1 * New upstream version 2.3.3.1 * Refresh patches * Don't run random-test at all as it depends on non-free Math::Random package * Drop single-cpu-for-test.patch, as we disabled random-test target completely * Remove unnecessary testsuite line from d/control -- Alexandre Mestiashvili <email address hidden> Fri, 13 Oct 2017 15:14:20 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- amd64 kfreebsd-amd64 all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| bowtie2_2.3.3.1-1.dsc | 2.1 KiB | 7174fa039e107fc0c51f864892c240ba481ae0b7b1a02e11b5cd3326619451a5 |
| bowtie2_2.3.3.1.orig.tar.gz | 5.5 MiB | 88affba8e20406869889d5089287208db42935ceb51a60dcb21e1e7cfff40fec |
| bowtie2_2.3.3.1-1.debian.tar.xz | 11.6 KiB | cbccb0a1f36aaf9f5c9c95a7a0002177689973404ff5b6051b3f0d59ed5fc76e |
Available diffs
- diff from 2.3.2-2 to 2.3.3.1-1 (133.2 KiB)
No changes file available.
Binary packages built by this source
- bowtie2: ultrafast memory-efficient short read aligner
is an ultrafast and memory-efficient tool for aligning sequencing reads
to long reference sequences. It is particularly good at aligning reads
of about 50 up to 100s or 1,000s of characters, and particularly good
at aligning to relatively long (e.g. mammalian) genomes.
.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
small: for the human genome, its memory footprint is typically
around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
- bowtie2-dbgsym: debug symbols for bowtie2
- bowtie2-examples: Examples for bowtie2
An ultrafast and memory-efficient tool for aligning sequencing reads
to long reference sequences. It is particularly good at aligning reads
of about 50 up to 100s or 1,000s of characters, and particularly good
at aligning to relatively long (e.g. mammalian) genomes.
.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
small: for the human genome, its memory footprint is typically
around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
.
This package provides some example data to work with bowtie2.
