Change log for bppsuite package in Ubuntu

bppsuite (2.4.1-6build3) noble; urgency=medium

  * No-change rebuild for CVE-2024-3094

 -- William Grant <email address hidden>  Mon, 01 Apr 2024 16:40:09 +1100

Available diffs

• diff from 2.4.1-6 (in Debian) to 2.4.1-6build3 (640 bytes)
• diff from 2.4.1-6build2 to 2.4.1-6build3 (309 bytes)

bppsuite (2.4.1-7) unstable; urgency=medium

  * Team upload.
  * d/patches/hardening: Added patch to not shadow dpkg-buildflags
  * d/rules: specifying RelWithDebInfo isn't necessary for getting
    unstripped binaries.
  * d/patches/spelling: new patch to fix typos.

 -- Michael R. Crusoe <email address hidden>  Mon, 25 Mar 2024 12:53:01 +0100

Available diffs

• diff from 2.4.1-6build3 (in Ubuntu) to 2.4.1-7 (2.5 KiB)

bppsuite (2.4.1-6build2) noble; urgency=medium

  * No-change rebuild against libbpp-seq12t64

 -- Matthias Klose <email address hidden>  Tue, 26 Mar 2024 11:43:03 +0100

Available diffs

• diff from 2.4.1-6build1 to 2.4.1-6build2 (297 bytes)

bppsuite (2.4.1-6build1) noble; urgency=medium

  * No-change rebuild against libbpp-seq12t64

 -- Steve Langasek <email address hidden>  Tue, 19 Mar 2024 06:05:12 +0000

Available diffs

• diff from 2.4.1-6 (in Debian) to 2.4.1-6build1 (539 bytes)

bppsuite (2.4.1-6) unstable; urgency=medium

  * Relax autopkgtest for arm64
  * Standards-Version: 4.6.2 (routine-update)

 -- Andreas Tille <email address hidden>  Tue, 10 Jan 2023 18:55:38 +0100

Available diffs

• diff from 2.4.1-5 to 2.4.1-6 (964 bytes)

bppsuite (2.4.1-5) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <email address hidden>  Tue, 01 Nov 2022 19:54:28 +0100

Available diffs

• diff from 2.4.1-4 to 2.4.1-5 (818 bytes)

bppsuite (2.4.1-4) unstable; urgency=medium

  * Fix watchfile to detect new versions on github
  * Exclude tag v3.0.0 to be considered a new version
    (see https://github.com/BioPP/bppsuite/issues/14#issuecomment-1041137412)
  * Standards-Version: 4.6.0 (routine-update)
  * Build-Depends: libeigen3-dev
  * Enable uscan to create a sensible download name

 -- Andreas Tille <email address hidden>  Wed, 16 Feb 2022 08:50:02 +0100

Available diffs

• diff from 2.4.1-3 to 2.4.1-4 (1.5 KiB)

bppsuite (2.4.1-3) unstable; urgency=medium

  * Approximate autopkgtest output. Closes: #963088.
  * Add Pranav Ballaney to Uploaders

 -- Pranav Ballaney <email address hidden>  Tue, 15 Sep 2020 18:56:51 +0530

Available diffs

• diff from 2.4.1-2 to 2.4.1-3 (795 bytes)

bppsuite (2.4.1-2) unstable; urgency=medium

  * Team upload.

  [ Pranav Ballaney ]
  * Add reference data for autopkgtests
  * Install examples for bppsuite
  * Add autopkgtests
  * Install docs

  [ Andreas Tille ]
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Remove trailing whitespace in debian/copyright (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Trim trailing whitespace.
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * Refer to specific version of license GPL-2+.
  * Fix day-of-week for changelog entry 0.3.0.
  * Cleanup installation of manpages

 -- Pranav Ballaney <email address hidden>  Fri, 12 Jun 2020 06:00:09 +0530

Available diffs

• diff from 2.4.1-1build1 (in Ubuntu) to 2.4.1-2 (93.1 KiB)

bppsuite (2.4.1-1build1) focal; urgency=medium

  * No-change rebuild for libgcc-s1 package name change.

 -- Matthias Klose <email address hidden>  Mon, 23 Mar 2020 07:10:54 +0100

Available diffs

• diff from 2.4.1-1 (in Debian) to 2.4.1-1build1 (318 bytes)

bppsuite (2.4.1-1) unstable; urgency=medium

  [ Julien Dutheil ]
  * New upstream version

  [ Andreas Tille ]
  * Standards-Version: 4.2.0

 -- Julien Dutheil <email address hidden>  Wed, 22 Aug 2018 09:18:13 +0200

Available diffs

• diff from 2.4.0-1 to 2.4.1-1 (2.2 KiB)

bppsuite (2.4.0-1) unstable; urgency=medium

  [ Julien Dutheil ]
  * New upstream version
  * Added full text of CeCILL license.
  * Compiles with -DCMAKE_BUILD_TYPE=RelWithDebInfo to generate debug info
    (lintian warning)
  * Point Vcs-fields to salsa.debian.org

  [ Andreas Tille ]
  * Standards-Version: 4.1.4

 -- Julien Dutheil <email address hidden>  Tue, 10 Apr 2018 14:53:00 +0200

Available diffs

• diff from 2.3.2-1 to 2.4.0-1 (18.6 KiB)
• diff from 2.3.2-1build1 (in Ubuntu) to 2.4.0-1 (18.8 KiB)

bppsuite (2.3.2-1build1) bionic; urgency=medium

  * No-change rebuild against libbpp-core4

 -- Steve Langasek <email address hidden>  Mon, 09 Apr 2018 07:59:31 +0000

Available diffs

• diff from 2.3.2-1 (in Debian) to 2.3.2-1build1 (511 bytes)

bppsuite (2.3.2-1) unstable; urgency=medium

  [ Julien Dutheil ]
  * New upstream version

  [ Steffen Moeller ]
  * debian/upstream/metadata; added reference to registries

  [ Andreas Tille ]
  * Standards-Version: 4.1.3
  * debhelper 11

 -- Julien Dutheil <email address hidden>  Wed, 07 Feb 2018 11:28:09 +0200

Available diffs

• diff from 2.3.1-4 to 2.3.2-1 (17.0 KiB)

bppsuite (2.3.1-4) unstable; urgency=medium

  * Add debhelper install file
  * Standards-Version: 4.1.0 (no changes needed)

 -- Andreas Tille <email address hidden>  Tue, 12 Sep 2017 15:01:42 +0200

Available diffs

• diff from 2.3.1-3 to 2.3.1-4 (553 bytes)

bppsuite (2.3.1-3) unstable; urgency=medium

  * Fixed linkage issue in x32 arch (second attempt) 

 -- Julien Dutheil <email address hidden>  Wed, 19 Jul 2017 20:56:28 +0200

Available diffs

• diff from 2.3.1-2 to 2.3.1-3 (567 bytes)

bppsuite (2.3.1-2) unstable; urgency=medium

  * Fixed linkage issue in x32 arch. 

 -- Julien Dutheil <email address hidden>  Tue, 18 Jul 2017 21:47:05 +0200

Available diffs

• diff from 2.3.1-1build1 (in Ubuntu) to 2.3.1-2 (920 bytes)

bppsuite (2.3.1-1build1) artful; urgency=medium

  * No-change rebuild against libbpp-core3

 -- Steve Langasek <email address hidden>  Mon, 26 Jun 2017 07:34:13 +0000

Available diffs

• diff from 2.2.0-0.1 (in Debian) to 2.3.1-1build1 (40.8 KiB)
• diff from 2.3.1-1 (in Debian) to 2.3.1-1build1 (514 bytes)

bppsuite (2.3.1-1) unstable; urgency=medium

  * New upstream version
  * Take over to Debian Med team maintenance
  * cme fix dpkg-control
  * debhelper 10
  * DEP5
  * Add watch file
  * d/rules: use dh
  * Fix manpage debhelper input
  * Adjust Build-Depends
  * Enhance description
  * Add examples package

 -- Andreas Tille <email address hidden>  Wed, 14 Jun 2017 15:12:35 +0200

bppsuite (2.2.0-0.1) unstable; urgency=low

  [ Andreas Beckmann ]
  * Non-maintainer upload.
  * New upstream release 2.2.0 (git commit 7890d12).
    (Closes: #776111, #825443, #708457)
  * Remove hardcoded library dependencies.  (Closes: #811271)

  [ Julien Dutheil ]
  * Compatibility update. Bio++ Program Suite version number is now indexed
    on Bio++'s version.
  * Programs support the --seed argument for setting the random seed.
  * bppSeqGen support generic characters as input.
  * bppPhySamp outputs sampled trees.

 -- Andreas Beckmann <email address hidden>  Sat, 10 Sep 2016 13:35:04 +0200

Available diffs

• diff from 0.8.0-1+ubuntu1 (in Ubuntu) to 2.2.0-0.1 (48.0 KiB)

bppsuite (0.8.0-1+ubuntu1) wily; urgency=medium

  * Remove hardcoded library dependencies.

 -- Iain Lane <email address hidden>  Tue, 11 Aug 2015 17:47:36 +0100

Available diffs

• diff from 0.8.0-1+build1 (in Debian) to 0.8.0-1+ubuntu1 (520 bytes)

bppsuite (0.8.0-1+build1) unstable; urgency=low


  * New models for proteins (COaLA)
  * New program bppMixedLikelihoods

 -- Julien Dutheil <email address hidden>  Fri, 08 Mar 2013 11:41:00 +0100

Available diffs

• diff from 0.7.0-1 to 0.8.0-1+build1 (35.1 KiB)
• diff from 0.8.0-1 to 0.8.0-1+build1 (1.2 KiB)

bppsuite (0.8.0-1) unstable; urgency=low


  * New models for proteins (COaLA)
  * New program bppMixedLikelihoods

 -- Julien Dutheil <email address hidden>  Fri, 08 Mar 2013 11:41:00 +0100

bppsuite (0.7.0-1) unstable; urgency=low


  * Several program improvements (more models, options, etc.)
  * New program bpp Alignment scores.

 -- Julien Dutheil <email address hidden>  Wed, 15 Feb 2012 09:17:00 +0100

Available diffs

• diff from 0.6.2-1 (in Ubuntu) to 0.7.0-1 (57.2 KiB)

bppsuite (0.6.2-1) unstable; urgency=low

  * RFP: Bio++ -- The Bio++ bioinformatics libraries. (Closes: #616373).
  * Packages are now non-native.