Ubuntu
centrifuge package

centrifuge 1.0.3-12 source package in Ubuntu

Changelog

centrifuge (1.0.3-12) unstable; urgency=medium

  * Team upload.
  * d/control: stop building on 32-bit architectures.
  * d/{upstream/metadata,copyright,watch}: link to the new repo

 -- Michael R. Crusoe <email address hidden>  Tue, 19 Mar 2024 18:50:22 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
centrifuge_1.0.3-12.dsc 2.0 KiB f79d43cc6261e731994291906cbb9179d85ff131da45d362e14c760f79cbbbcb
centrifuge_1.0.3.orig.tar.gz 684.8 KiB 71340f5c0c20dd4f7c4d98ea87f9edcbb1443fff8434e816a5465cbebaca9343
centrifuge_1.0.3-12.debian.tar.xz 15.0 KiB fff8928ef0401078fab0d6a10af47080bd0f784adac9f61aaf5195c7cc369ca3

Available diffs

No changes file available.

Binary packages built by this source

centrifuge: rapid and memory-efficient system for classification of DNA sequences

 Centrifuge is a very rapid and memory-efficient system for the
 classification of DNA sequences from microbial samples, with better
 sensitivity than and comparable accuracy to other leading systems. The
 system uses a novel indexing scheme based on the Burrows-Wheeler
 transform (BWT) and the Ferragina-Manzini (FM) index, optimized
 specifically for the metagenomic classification problem. Centrifuge
 requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
 genomes) yet provides very fast classification speed, allowing it to
 process a typical DNA sequencing run within an hour. Together these
 advances enable timely and accurate analysis of large metagenomics data
 sets on conventional desktop computers.

centrifuge-dbgsym: debug symbols for centrifuge