Ubuntu
centrifuge package

centrifuge 1.0.3~beta-1 source package in Ubuntu

Changelog

centrifuge (1.0.3~beta-1) unstable; urgency=low

  * Initial release (Closes: #886463)

 -- Andreas Tille <email address hidden>  Sat, 06 Jan 2018 12:11:48 +0100

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Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Low Urgency

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Series Pocket Published Component Section

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File Size SHA-256 Checksum
centrifuge_1.0.3~beta-1.dsc 2.0 KiB 5e8333ff5dba1ad3c58558113f559e9303dcdb23c93b7142eeed21d5582d8386
centrifuge_1.0.3~beta.orig.tar.gz 697.5 KiB 9561f0b106f66e966b10e5add1ffe4507eb02a65a69741e07b0f6f24a240ccea
centrifuge_1.0.3~beta-1.debian.tar.xz 6.0 KiB 582ebeb7f5ea264d3facca4bea4b81c444b0e25a0ecc502a402ba31a4a2ad386

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Binary packages built by this source

centrifuge: rapid and memory-efficient system for classification of DNA sequences

 Centrifuge is a very rapid and memory-efficient system for the
 classification of DNA sequences from microbial samples, with better
 sensitivity than and comparable accuracy to other leading systems. The
 system uses a novel indexing scheme based on the Burrows-Wheeler
 transform (BWT) and the Ferragina-Manzini (FM) index, optimized
 specifically for the metagenomic classification problem. Centrifuge
 requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
 genomes) yet provides very fast classification speed, allowing it to
 process a typical DNA sequencing run within an hour. Together these
 advances enable timely and accurate analysis of large metagenomics data
 sets on conventional desktop computers.

centrifuge-dbgsym: debug symbols for centrifuge