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clustalw-mpi package

clustalw-mpi 0.15-3 source package in Ubuntu

Changelog

clustalw-mpi (0.15-3) unstable; urgency=low


  * Removed obsolete DM-Upload-Allowed field.
  * Using Debhelper 9.
  * Normalised VCS URLs.
  * Normalised debian/control using config-model.
  * Conforms to Policy 3.9.4.
  * Version link to GPL-2 in debian/copyright.
  * Escape minus sign in ‘debian/clustalw-mpi.1’.
  * Uploaded for openmpi transition (Closes: #722073). 

 -- Charles Plessy <email address hidden>  Sun, 08 Sep 2013 10:08:06 +0900

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Low Urgency

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File Size SHA-256 Checksum
clustalw-mpi_0.15-3.dsc 2.1 KiB a852eb86bd69d8051c9381feec22cb26e5d2bca466b7a972f9361714f98bb4e7
clustalw-mpi_0.15.orig.tar.gz 151.4 KiB 580243e9a8e34ea051aeee8e28e3529fe8427526bcae7399617435ac55a0ad9b
clustalw-mpi_0.15-3.debian.tar.gz 4.7 KiB 511a128390c222b90b2946b87a28142a9a6de7a77ac82ecc798b9aa874adaf8d

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Binary packages built by this source

clustalw-mpi: MPI-distributed global sequence alignment with ClustalW

 ClustalW is a popular tool for multiple sequence alignment. The
 alignment is achieved via three steps: pairwise alignment,
 guide-tree generation and progressive alignment. ClustalW-MPI is an
 MPI implementation of ClustalW. Based on
 version 1.82 of the original ClustalW, both the pairwise
 and progressive alignments are parallelized with MPI, a
 popular message passing programming standard. The
 pairwise alignments can be easily parallelized since the many
 alignments are time independent on each other. However
 the progressive alignments are essentially not parallelizable
 because of the time dependencies between each alignment.
 .
 Here the recursive parallelism paradigm is applied to the linear space
 profile-profile alignment algorithm. This approach is more time
 efficient on computers with distributed memory architecture.
 Traditional approach that relies on precomputing the profile-profile
 score matrix has also been implemented. Results shown the latter is indeed
 more appropriate for shared memory multiprocessor computer.
 .
 ClustalX is suggested for its support for local realignments, seaview
 is a versatile editor of alignments.
 .
 The original ClustalW/ClustalX can be found at
 URL: http://www.clustal.org/download/pre-2/