Change log for cufflinks package in Ubuntu

cufflinks (2.2.1+dfsg.1-9build1) noble; urgency=medium

  * No-change rebuild for boost defaults change.

 -- Matthias Klose <email address hidden>  Tue, 19 Dec 2023 15:48:12 +0100

Available diffs

• diff from 2.2.1+dfsg.1-9 (in Debian) to 2.2.1+dfsg.1-9build1 (332 bytes)

cufflinks (2.2.1+dfsg.1-9) unstable; urgency=medium

  * Fix autoconf issue
    Closes: #998241
  * Enable build using gcc-11 by forcing -std=c++14
  * Remove redundant debian/gbp.conf
  * Standards-Version: 4.6.0 (routine-update)
  * cme fix dpkg-control

 -- Andreas Tille <email address hidden>  Mon, 08 Nov 2021 14:18:10 +0100

Available diffs

• diff from 2.2.1+dfsg.1-8build1 (in Ubuntu) to 2.2.1+dfsg.1-9 (1.7 KiB)

cufflinks (2.2.1+dfsg.1-8build1) hirsute; urgency=medium

  * No-change rebuild for boost soname change.

 -- Matthias Klose <email address hidden>  Sat, 12 Dec 2020 13:05:03 +0100

Available diffs

• diff from 2.2.1+dfsg.1-8 (in Debian) to 2.2.1+dfsg.1-8build1 (334 bytes)

cufflinks (2.2.1+dfsg.1-8) unstable; urgency=medium

  [ Reiner Herrmann ]
  * fix FTBFS with GCC 10
    Closes: #966191

  [ Andreas Tille ]
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Use secure URI in Homepage field.
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * Remove obsolete field Name from debian/upstream/metadata (already present in
    machine-readable debian/copyright).

 -- Andreas Tille <email address hidden>  Sun, 02 Aug 2020 10:02:34 +0200

Available diffs

• diff from 2.2.1+dfsg.1-7 to 2.2.1+dfsg.1-8 (1.5 KiB)

cufflinks (2.2.1+dfsg.1-7) unstable; urgency=medium

  * Team upload
  * Actually launch dh with --python3

 -- Gianfranco Costamagna <email address hidden>  Fri, 21 Feb 2020 16:31:57 +0100

Available diffs

• diff from 2.2.1+dfsg.1-5 to 2.2.1+dfsg.1-7 (821 bytes)

cufflinks (2.2.1+dfsg.1-5) unstable; urgency=medium

  [ Steffen Möller ]
  * Update metadata with ref to conda

  [ Alexandre Mestiashvili ]
  * Introduce patch converting cuffmerge to python3,
    Thanks to Cheng H. Lee, Closes: #936351, #942930
  * d/control: s/python/python3/g, bump Policy to 4.5.0

 -- Alexandre Mestiashvili <email address hidden>  Sat, 08 Feb 2020 18:50:33 +0100

Available diffs

• diff from 2.2.1+dfsg.1-4ubuntu2 (in Ubuntu) to 2.2.1+dfsg.1-5 (5.1 KiB)

cufflinks (2.2.1+dfsg.1-4ubuntu2) focal; urgency=medium

  * No change rebuild against new boost1.71 ABI

 -- Dimitri John Ledkov <email address hidden>  Mon, 03 Feb 2020 20:11:36 +0000

Available diffs

• diff from 2.2.1+dfsg.1-4ubuntu1 to 2.2.1+dfsg.1-4ubuntu2 (551 bytes)

cufflinks (2.2.1+dfsg.1-4ubuntu1) focal; urgency=medium

  * Build using dh-python.

 -- Matthias Klose <email address hidden>  Fri, 10 Jan 2020 16:32:44 +0100

Available diffs

• diff from 2.2.1+dfsg.1-4 (in Debian) to 2.2.1+dfsg.1-4ubuntu1 (949 bytes)

cufflinks (2.2.1+dfsg.1-4) unstable; urgency=medium

  [ Valentin Marcon ]
  * Correct DOI

  [ Alexandre Mestiashvili ]
  * Drop gffread binary, add gffread package to Recommends in d/control
    Closes: #934600
  * Switch to debhelper-compat, bump Policy to 4.4.0, update Uploader's
    email address
  * Add README.Debian, explaining why gffread is removed from cufflinks

 -- Alexandre Mestiashvili <email address hidden>  Tue, 20 Aug 2019 17:51:28 +0200

Available diffs

• diff from 2.2.1+dfsg.1-3 to 2.2.1+dfsg.1-4 (3.9 KiB)

cufflinks (2.2.1+dfsg.1-3) unstable; urgency=medium

  * XS-Autobuild: yes
  * d/rules: no manual inforcement of compression which is default
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1

 -- Andreas Tille <email address hidden>  Thu, 18 Oct 2018 15:30:41 +0200

Available diffs

• diff from 2.2.1+dfsg.1-2build1 (in Ubuntu) to 2.2.1+dfsg.1-3 (1.1 KiB)

cufflinks (2.2.1+dfsg.1-2build1) cosmic; urgency=medium

  * No-change rebuild for boost soname change.

 -- Matthias Klose <email address hidden>  Tue, 17 Jul 2018 12:54:45 +0000

Available diffs

• diff from 2.2.1+dfsg.1-2 (in Debian) to 2.2.1+dfsg.1-2build1 (332 bytes)

cufflinks (2.2.1+dfsg.1-2) unstable; urgency=medium

  [ Steffen Moeller ]
  * debian/upstream/metadata:
    - Added references to software catalogues.
    - yamllint cleanliness

  [ Alexandre Mestiashvili ]
  * Add patch fixing FTBFS with upcoming boost1.65+, Closes: #880375
    thanks to Dimitri John Ledkov <email address hidden>
  * Bump Standards-Version to 4.1.1

 -- Alexandre Mestiashvili <email address hidden>  Thu, 02 Nov 2017 09:48:09 +0100

Available diffs

• diff from 2.2.1+dfsg.1-1ubuntu1 (in Ubuntu) to 2.2.1+dfsg.1-2 (2.0 KiB)

cufflinks (2.2.1+dfsg.1-1ubuntu1) bionic; urgency=medium

  * Fix FTBFS, boost::tr1 no longer exists.

 -- Dimitri John Ledkov <email address hidden>  Tue, 31 Oct 2017 00:55:54 +0000

Available diffs

• diff from 2.2.1-3build1 to 2.2.1+dfsg.1-1ubuntu1 (144.2 KiB)
• diff from 2.2.1+dfsg.1-1 (in Debian) to 2.2.1+dfsg.1-1ubuntu1 (839 bytes)

cufflinks (2.2.1-3build2) bionic; urgency=medium

  * No-change rebuild for boost soname change.

 -- Matthias Klose <email address hidden>  Thu, 26 Oct 2017 17:12:51 +0000

Available diffs

• diff from 2.2.1-3build1 to 2.2.1-3build2 (320 bytes)

cufflinks (2.2.1+dfsg.1-1) unstable; urgency=medium

  [ Mattia Rizzolo ]
  * add a closes to the previous changelog entry

  [ Alexandre Mestiashvili ]
  * Update d/watch
  * Update d/copyright, add Files-Excluded section,
    use https for copyrigth-format, add Upstream-Name
  * New upstream version 2.2.1+dfsg.1
  * Update d/rules, use variables provided by /usr/share/dpkg/default.mk
  * Add patch fixing ftbfs with gcc-7, Closes: #871234
    thanks to Jeff Epler <email address hidden>
  * Update 0003-fix_includes_path.patch and 0001-fix_spelling.patch
  * Bump Standards-Version in d/control

 -- Alexandre Mestiashvili <email address hidden>  Tue, 05 Sep 2017 23:42:17 +0200

Available diffs

• diff from 2.2.1-3build2 (in Ubuntu) to 2.2.1+dfsg.1-1 (144.2 KiB)

cufflinks (2.2.1-3build1) zesty; urgency=high

  * No change rebuild against boost1.62.

 -- Dimitri John Ledkov <email address hidden>  Tue, 01 Nov 2016 16:14:57 +0000

Available diffs

• diff from 2.2.1-3 (in Debian) to 2.2.1-3build1 (566 bytes)

cufflinks (2.2.1-3) unstable; urgency=medium

  * Use unversioned libboost.  (Thanks for the hint to Gianfranco Costamagna)
  * Fix gcc-6.1 build issue caused by an unmaintained code copy of liblemon.
    Thanks for the hint to Graham Inggs <email address hidden>
    Closes: #833493

 -- Andreas Tille <email address hidden>  Tue, 16 Aug 2016 13:46:04 +0200

Available diffs

• diff from 2.2.1-2 to 2.2.1-3 (1.0 KiB)
• diff from 2.2.1-2build1 (in Ubuntu) to 2.2.1-3 (1.1 KiB)

cufflinks (2.2.1-2build1) yakkety; urgency=medium

  * No-change rebuild for boost soname change.

 -- Matthias Klose <email address hidden>  Thu, 04 Aug 2016 08:15:43 +0000

Available diffs

• diff from 2.2.1-2 (in Debian) to 2.2.1-2build1 (316 bytes)

cufflinks (2.2.1-2) unstable; urgency=medium

  * Watch file pointing to Github
  * cme fix dpkg-control
  * Use libboost 1.60
    Closes: #797280, #822121
  * hardening=+all

 -- Andreas Tille <email address hidden>  Tue, 12 Jul 2016 14:12:45 +0200

cufflinks (2.2.1-1build1) wily; urgency=medium

  * No change rebuild for boost1.58/libstdc++6.

 -- Dimitri John Ledkov <email address hidden>  Sun, 02 Aug 2015 13:40:41 +0100

Available diffs

• diff from 2.2.1-1 (in Debian) to 2.2.1-1build1 (334 bytes)

cufflinks (2.2.1-1) unstable; urgency=medium


  * d/control: cme fix dpkg-control
  * Imported Upstream version 2.2.1

 -- Alexandre Mestiashvili <email address hidden>  Fri, 16 May 2014 16:59:52 +0200

Available diffs

• diff from 2.2.0-1 to 2.2.1-1 (73.8 KiB)

cufflinks (2.2.0-1) unstable; urgency=medium


  [ James McCoy ]
  * Move debian/upstream to debian/upstream/metadata

  [ Alexandre Mestiashvili ]
  * Imported Upstream version 2.2.0
  * d/rules: 
     - link to the serialization library "-lboost_serialization"
     - generate man pages automatically with help2man 
     - separate rule for manpage for gffread as it doesn't return usage
       message when executed without arguments  
  * d/control: 
     - use canonical VCS-* fields
     - updated Standards-Version
     - Build-Depends: add help2man
  * d/patches/gffread_show_usage.patch: fix wrong USAGE indentation causing
    buffer overflow in gffread when using -h, --help and some other arguments
  * d/*.1: removed obsoleted manpages
  * d/copyright: updated Source, Copyright years

 -- Alexandre Mestiashvili <email address hidden>  Fri, 11 Apr 2014 13:12:25 +0200

Available diffs

• diff from 2.1.1-4 to 2.2.0-1 (109.7 KiB)

cufflinks (2.1.1-4) unstable; urgency=low


  * Force use boost_system, boost_thread when linking. Fixing FTBFS in
    ubuntu.
  * Enable parallel build.

 -- Dmitrijs Ledkovs <email address hidden>  Wed, 23 Oct 2013 16:30:40 +0100

Available diffs

• diff from 2.1.1-2 to 2.1.1-4 (1.3 KiB)
• diff from 2.1.1-3build1 (in Ubuntu) to 2.1.1-4 (1.5 KiB)

cufflinks (2.1.1-3build1) trusty; urgency=low

  * No change rebuild for Boost 1.54 transition.
 -- Dmitrijs Ledkovs <email address hidden>   Tue, 22 Oct 2013 18:08:35 +0100

Available diffs

• diff from 2.1.1-3 (in Debian) to 2.1.1-3build1 (559 bytes)

cufflinks (2.1.1-3) unstable; urgency=low


  * Rebuild against boost1.54.

 -- Dmitrijs Ledkovs <email address hidden>  Sat, 07 Sep 2013 17:10:26 +0100

cufflinks (2.1.1-2) unstable; urgency=low


  * Fix failing to build from source against boost1.53. (Closes: #709252)

 -- Dmitrijs Ledkovs <email address hidden>  Thu, 23 May 2013 01:05:02 +0100

Available diffs

• diff from 1.3.0-2ubuntu2 (in Ubuntu) to 2.1.1-2 (176.6 KiB)

cufflinks (1.3.0-2ubuntu2) saucy; urgency=low

  * Cherry pick patches from Gentoo for boost1.53 transition.
 -- Dmitrijs Ledkovs <email address hidden>   Thu, 02 May 2013 22:35:14 +0100

Available diffs

• diff from 1.3.0-2ubuntu1 to 1.3.0-2ubuntu2 (10.8 KiB)

cufflinks (1.3.0-2ubuntu1) quantal; urgency=low

  * Merge with Debian, remaining changes:
    + debian/patches/0004-fix-m64-usage-and-lfs.patch:
      Update configure.ac to not force -m64. Just because the compiler
      supports it, doesn't mean it can compile natively to it (e.g. on
      powerpc, you can compile -m64, but there are no headers for it
      plus it cannot run on 32-bit systems).

  * Rebuild against boost1.49

Available diffs

• diff from 1.3.0-1ubuntu2 to 1.3.0-2ubuntu1 (4.1 KiB)

cufflinks (1.3.0-1ubuntu2) precise; urgency=low

  * Remove AC_SYS_LARGEFILE check. Blows up some c++ declerations
    since the proper cflags aren't getting propogated.
 -- Ben Collins <email address hidden>   Wed, 18 Jan 2012 22:58:30 +0000

Available diffs

• diff from 1.3.0-1ubuntu1 to 1.3.0-1ubuntu2 (767 bytes)

cufflinks (1.3.0-1ubuntu1) precise; urgency=low

  * Update configure.ac to not force -m64. Just because the compiler
    supports it, doesn't mean it can compile natively to it (e.g. on
    powerpc, you can compile -m64, but there are no headers for it
    plus it cannot run on 32-bit systems).
  * Also add AC_SYS_LARGEFILE check to configure.ac. This should do
    what the original configure.ac was attempting to do, but it will
    work on 32-bit architectures and compile natively.
 -- Ben Collins <email address hidden>   Wed, 18 Jan 2012 22:14:54 +0000

Available diffs

• diff from 1.3.0-1 (in Debian) to 1.3.0-1ubuntu1 (1.0 KiB)

cufflinks (1.3.0-1) unstable; urgency=low


  [ Alexandre Mestiashvili ]
  * New upstream release 
  * Fixed spelling error.
  * Updated source version

  [ Charles Plessy ]
  * Removed quilt patch management, and rely on dpkg-dev exclusively.

 -- Charles Plessy <email address hidden>  Fri, 06 Jan 2012 09:20:23 +0900