ea-utils 1.1.2+dfsg-1 source package in Ubuntu
Changelog
ea-utils (1.1.2+dfsg-1) unstable; urgency=medium * Initial upload to Debian (Closes: #793585) -- Andreas Tille <email address hidden> Sun, 26 Jul 2015 17:33:18 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| ea-utils_1.1.2+dfsg-1.dsc | 2.0 KiB | b581df6de58601c327df79f620a963caf086aac5baf13f55930054b54c84495f |
| ea-utils_1.1.2+dfsg.orig.tar.xz | 133.6 KiB | d19298532ba694a09b194c208d647c7ddd94d79f1cf461431df6c6f4ffd9f93f |
| ea-utils_1.1.2+dfsg-1.debian.tar.xz | 10.9 KiB | 855806edcbe72aaf399dcaccb0b927a84eae6938c6a3fde528eec40bc0a57cca |
No changes file available.
Binary packages built by this source
- ea-utils: command-line tools for processing biological sequencing data
Ea-utils provides a set of command-line tools for processing biological
sequencing data, barcode demultiplexing, adapter trimming, etc.
.
Primarily written to support an Illumina based pipeline - but should work with
any FASTQs.
.
Main Tools are:
.
* fastq-mcf
Scans a sequence file for adapters, and, based on a log-scaled threshold,
determines a set of clipping parameters and performs clipping. Also does
skewing detection and quality filtering.
* fastq-multx
Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
master set fields. Keeps multiple reads in-sync during demultiplexing. Can
verify that the reads are in-sync as well, and fail if they're not.
* fastq-join
Similar to audy's stitch program, but in C, more efficient and supports some
automatic benchmarking and tuning. It uses the same "squared distance for
anchored alignment" as other tools.
* varcall
Takes a pileup and calculates variants in a more easily parameterized manner
than some other tools.
- ea-utils-dbgsym: debug symbols for package ea-utils
Ea-utils provides a set of command-line tools for processing biological
sequencing data, barcode demultiplexing, adapter trimming, etc.
.
Primarily written to support an Illumina based pipeline - but should work with
any FASTQs.
.
Main Tools are:
.
* fastq-mcf
Scans a sequence file for adapters, and, based on a log-scaled threshold,
determines a set of clipping parameters and performs clipping. Also does
skewing detection and quality filtering.
* fastq-multx
Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
master set fields. Keeps multiple reads in-sync during demultiplexing. Can
verify that the reads are in-sync as well, and fail if they're not.
* fastq-join
Similar to audy's stitch program, but in C, more efficient and supports some
automatic benchmarking and tuning. It uses the same "squared distance for
anchored alignment" as other tools.
* varcall
Takes a pileup and calculates variants in a more easily parameterized manner
than some other tools.
