ea-utils 1.1.2+dfsg-3 source package in Ubuntu
Changelog
ea-utils (1.1.2+dfsg-3) unstable; urgency=medium
* Update build dependencies for GSL 2, change libgsl0-dev to libgsl-dev.
(thanks to Bas Couwenberg for the patch)
Closes: #807198
-- Andreas Tille <email address hidden> Mon, 07 Dec 2015 10:13:47 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Xenial | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| ea-utils_1.1.2+dfsg-3.dsc | 2.0 KiB | 4e84c01b23d6916781ef80096d952ae2c21fc07e2e460ba632414913f71cec60 |
| ea-utils_1.1.2+dfsg.orig.tar.xz | 133.6 KiB | d19298532ba694a09b194c208d647c7ddd94d79f1cf461431df6c6f4ffd9f93f |
| ea-utils_1.1.2+dfsg-3.debian.tar.xz | 11.8 KiB | 956d89c23e959e249aa02c8668947cd7ca2453b81be139a8862e1da37f594124 |
Available diffs
- diff from 1.1.2+dfsg-2 to 1.1.2+dfsg-3 (539 bytes)
No changes file available.
Binary packages built by this source
- ea-utils: command-line tools for processing biological sequencing data
Ea-utils provides a set of command-line tools for processing biological
sequencing data, barcode demultiplexing, adapter trimming, etc.
.
Primarily written to support an Illumina based pipeline - but should work with
any FASTQs.
.
Main Tools are:
.
* fastq-mcf
Scans a sequence file for adapters, and, based on a log-scaled threshold,
determines a set of clipping parameters and performs clipping. Also does
skewing detection and quality filtering.
* fastq-multx
Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
master set fields. Keeps multiple reads in-sync during demultiplexing. Can
verify that the reads are in-sync as well, and fail if they're not.
* fastq-join
Similar to audy's stitch program, but in C, more efficient and supports some
automatic benchmarking and tuning. It uses the same "squared distance for
anchored alignment" as other tools.
* varcall
Takes a pileup and calculates variants in a more easily parameterized manner
than some other tools.
- ea-utils-dbgsym: debug symbols for package ea-utils
Ea-utils provides a set of command-line tools for processing biological
sequencing data, barcode demultiplexing, adapter trimming, etc.
.
Primarily written to support an Illumina based pipeline - but should work with
any FASTQs.
.
Main Tools are:
.
* fastq-mcf
Scans a sequence file for adapters, and, based on a log-scaled threshold,
determines a set of clipping parameters and performs clipping. Also does
skewing detection and quality filtering.
* fastq-multx
Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
master set fields. Keeps multiple reads in-sync during demultiplexing. Can
verify that the reads are in-sync as well, and fail if they're not.
* fastq-join
Similar to audy's stitch program, but in C, more efficient and supports some
automatic benchmarking and tuning. It uses the same "squared distance for
anchored alignment" as other tools.
* varcall
Takes a pileup and calculates variants in a more easily parameterized manner
than some other tools.
