Ubuntu
exonerate package

exonerate 2.2.0-3ubuntu1 source package in Ubuntu

Changelog

exonerate (2.2.0-3ubuntu1) precise; urgency=low

  * Sync on Debian
  * Use dh-autoreconf instead of aclocal-1.4 to fix FTBFS with --as-needed;
    Debian's autoreconf patch doesn't work with --as-needed
    - update debian/control
    - update debian/rules
  * Disable Debian's autoreconf patch (since we're using dh-autoreconf)
    - update debian/patches/series

exonerate (2.2.0-3) unstable; urgency=low

  [ Charles Plessy ]
  * Documented some meta-information in ‘debian/upstream-metadata.yaml’.

  [ Andreas Tille ]
  * debian/source/format: 3.0 (quilt)
  * debian/control:
    - Standards-Version: 3.9.2 (no changes needed)
    - Fixed Vcs fields
  * Debhlper 8 (control+compat)
  * debian/copyright: some DEP5 changes
  * debian/patches/fix_build-as-needed.patch: Fix build with --as-needed
    (Thanks to Micah Gersten <email address hidden>)
    Closes: #651802
  * debian/patches/autoreconf.patch: Build with recent autotools
  * debian/patches/manpages.patch: Fix some lintian warnings
  * debian/rules:
    - Convert to short dh notation
    - Remove codegen in clean target
    - Install upstream changelog only once
 -- Micah Gersten <email address hidden>   Fri, 23 Dec 2011 01:11:58 -0600

Upload details

Uploaded by:
Micah Gersten
Uploaded to:
Precise
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
science
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
exonerate_2.2.0.orig.tar.gz 497.9 KiB 0ea2720b1388fa329f889522f43029b416ae311f57b229129a65e779616fe5ff
exonerate_2.2.0-3ubuntu1.debian.tar.gz 177.5 KiB 7ab0e057896b243fd7cb70b9ea5849bb6faf866f423c2b5e7eec164230f9ee8f
exonerate_2.2.0-3ubuntu1.dsc 1.5 KiB 2d26eb95d0b4be41e0c6964aa7348e79bc58ec24904a2b8d7de2078314f405c7

Available diffs

View changes file

Binary packages built by this source

exonerate: generic tool for pairwise sequence comparison

 Exonerate allows you to align sequences using a many alignment models, using
 either exhaustive dynamic programming, or a variety of heuristics. Much of
 the functionality of the Wise dynamic programming suite was reimplemented in C
 for better efficiency. Exonerate is an intrinsic component of the building of
 the Ensembl genome databases, providing similarity scores between RNA and DNA
 sequences and thus determining splice variants and coding sequences in
 general.
 .
 An In-silico PCR Experiment Simulation System (see the ipcress man page) is
 packaged with exonerate.
 .
 This package also comes with a selection of utilities for performing
 simple manipulations quickly on fasta files beyond 2Gb