fitgcp 0.0.20150429-1 source package in Ubuntu


fitgcp (0.0.20150429-1) unstable; urgency=medium

  * New upstream checkout
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 -- Andreas Tille <email address hidden>  Mon, 09 Jan 2017 13:27:48 +0100

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Uploaded by:
Debian Med on 2017-01-09
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Original maintainer:
Debian Med
Medium Urgency

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Series Pocket Published Component Section
Zesty proposed on 2017-01-09 universe misc


File Size SHA-256 Checksum
fitgcp_0.0.20150429-1.dsc 1.9 KiB d657b5d9ebbb2f8dbd64e4595591ff68caa85c77bb71332b1972db522728c004
fitgcp_0.0.20150429.orig.tar.xz 8.2 KiB f18c9c2155dcf7eaf0bedd349d6accbe051110a6958478fcb58507cfa062390e
fitgcp_0.0.20150429-1.debian.tar.xz 4.6 KiB 927f86fd02e70695485dd64abc22ce96da5145101ca3313d8604f6399456cb4e

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Binary packages built by this source

fitgcp: fitting genome coverage distributions with mixture models

 Genome coverage, the number of sequencing reads mapped to a position in
 a genome, is an insightful indicator of irregularities within sequencing
 experiments. While the average genome coverage is frequently used within
 algorithms in computational genomics, the complete information available
 in coverage profiles (i.e. histograms over all coverages) is currently
 not exploited to its full extent. Thus, biases such as fragmented or
 erroneous reference genomes often remain unaccounted for. Making this
 information accessible can improve the quality of sequencing experiments
 and quantitative analyses.
 fitGCP is a framework for fitting mixtures of probability distributions
 to genome coverage profiles. Besides commonly used distributions, fitGCP
 uses distributions tailored to account for common artifacts. The mixture
 models are iteratively fitted based on the Expectation-Maximization