freecontact 1.0.21-12 source package in Ubuntu
Changelog
freecontact (1.0.21-12) unstable; urgency=medium * Upstream download vanished * Drop useless Pre-Depends -- Andreas Tille <email address hidden> Fri, 21 Jan 2022 08:51:35 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Lunar | release | universe | misc | |
Jammy | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
freecontact_1.0.21-12.dsc | 2.3 KiB | 44fd383096fd785414eea93908c4222ef4670e43a4c5b2646309d569759ba8b3 |
freecontact_1.0.21.orig.tar.xz | 401.0 KiB | 513c503ace70abc3cbc12d1aff616ffd9b6564a73a584efd7435b804479bd2a8 |
freecontact_1.0.21-12.debian.tar.xz | 8.3 KiB | 07c2c36a658ac0f49ab61c4b33b8003cb1ff5d10d16929b1f051c2aa57d8e5a1 |
Available diffs
- diff from 1.0.21-11 to 1.0.21-12 (647 bytes)
No changes file available.
Binary packages built by this source
- freecontact: No summary available for freecontact in ubuntu kinetic.
No description available for freecontact in ubuntu kinetic.
- freecontact-dbgsym: debug symbols for freecontact
- libfreecontact-dev: fast protein contact predictor library - development files
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains files necessary for developing applications with
libfreecontact.
- libfreecontact-doc: documentation for libfreecontact
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains HTML documentation for libfreecontact.
- libfreecontact0v5: fast protein contact predictor library
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the shared library implementing freecontact.
- libfreecontact0v5-dbgsym: debug symbols for libfreecontact0v5