freecontact 1.0.21-13 source package in Ubuntu
Changelog
freecontact (1.0.21-13) unstable; urgency=medium
* Team upload.
* d/rules: update d-shlibmove override to gcc-12.
The d-shlibmove override pointed to libgfortran-10-dev, causing ftbfs
in bookworm, which ships only libgfortran-12-dev. (Closes: #1036260)
-- Étienne Mollier <email address hidden> Thu, 18 May 2023 11:43:26 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Mantic | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| freecontact_1.0.21-13.dsc | 2.4 KiB | c7ec0491090fe733056759abb8de7e050558ad09c38da8128533599fb0d11a88 |
| freecontact_1.0.21.orig.tar.xz | 401.0 KiB | 513c503ace70abc3cbc12d1aff616ffd9b6564a73a584efd7435b804479bd2a8 |
| freecontact_1.0.21-13.debian.tar.xz | 8.4 KiB | 33e47aea6f9621addf5d16685fa9b61984beae1df0e742e425fd414166d6639b |
Available diffs
- diff from 1.0.21-12 to 1.0.21-13 (571 bytes)
No changes file available.
Binary packages built by this source
- freecontact: fast protein contact predictor
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the command line tool freecontact(1).
- freecontact-dbgsym: debug symbols for freecontact
- libfreecontact-dev: fast protein contact predictor library - development files
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains files necessary for developing applications with
libfreecontact.
- libfreecontact-doc: documentation for libfreecontact
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains HTML documentation for libfreecontact.
- libfreecontact0v5: fast protein contact predictor library
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the shared library implementing freecontact.
- libfreecontact0v5-dbgsym: No summary available for libfreecontact0v5-dbgsym in ubuntu noble.
No description available for libfreecontact0
v5-dbgsym in ubuntu noble.
