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freecontact package

freecontact 1.0.21-13build1 source package in Ubuntu

Changelog

freecontact (1.0.21-13build1) noble; urgency=medium

  * No-change rebuild for boost defaults change.

 -- Matthias Klose <email address hidden>  Tue, 19 Dec 2023 15:49:16 +0100

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Uploaded by:
Matthias Klose
Uploaded to:
Noble
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

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Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
freecontact_1.0.21.orig.tar.xz 401.0 KiB 513c503ace70abc3cbc12d1aff616ffd9b6564a73a584efd7435b804479bd2a8
freecontact_1.0.21-13build1.debian.tar.xz 8.5 KiB 6dd4ff1ec4394416de4678b684032ad089f87228e3bbb0c28b85845a8c584838
freecontact_1.0.21-13build1.dsc 2.3 KiB c5432cd88dfb336989881578073fe93ac208e320180d0cd13a649b3a639cd81d

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Binary packages built by this source

freecontact: fast protein contact predictor

 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains the command line tool freecontact(1).

freecontact-dbgsym: debug symbols for freecontact
libfreecontact-dev: fast protein contact predictor library - development files

 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains files necessary for developing applications with
 libfreecontact.

libfreecontact-doc: documentation for libfreecontact

 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains HTML documentation for libfreecontact.

libfreecontact0v5: No summary available for libfreecontact0v5 in ubuntu noble.

No description available for libfreecontact0v5 in ubuntu noble.

libfreecontact0v5-dbgsym: No summary available for libfreecontact0v5-dbgsym in ubuntu noble.

No description available for libfreecontact0v5-dbgsym in ubuntu noble.