gasic 0.0.r19-5 source package in Ubuntu
Changelog
gasic (0.0.r19-5) unstable; urgency=medium
* Use 2to3 to port to Python3
Closes: #936582
* In run_mappers.py the executable mason from seqan-apps version 1.x
was called. This is not available any more in seqan-apps 2.x and
thus it was replaced by mason_simulator. Hope that's OK.
* debhelper-compat 12
* Standards-Version: 4.4.1
* Remove trailing whitespace in debian/changelog
* Use secure URI in debian/watch.
* Set upstream metadata fields: Archive.
-- Andreas Tille <email address hidden> Tue, 08 Oct 2019 15:54:54 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Focal | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| gasic_0.0.r19-5.dsc | 2.0 KiB | 85b219c5c64801d1bb69980adc6eb1953a7dc2fe6da440e0500defdd9765cb1e |
| gasic_0.0.r19.orig.tar.xz | 12.1 KiB | dcda434ace63719c7d3baca18c5da9adfe0e8a269b8dc6224306be9ddec9b8a9 |
| gasic_0.0.r19-5.debian.tar.xz | 8.2 KiB | 085e09e1a264100220941771c403ec513b853c41055d35dbfe583f5a794bd0c0 |
Available diffs
- diff from 0.0.r19-4 to 0.0.r19-5 (4.4 KiB)
No changes file available.
Binary packages built by this source
- gasic: genome abundance similarity correction
One goal of sequencing based metagenomic analysis is the quantitative
taxonomic assessment of microbial community compositions. However, the
majority of approaches either quantify at low resolution (e.g. at phylum
level) or have severe problems discerning highly similar species. Yet,
accurate quantification on species level is desirable in applications
such as metagenomic diagnostics or community comparison. GASiC is a
method to correct read alignment results for the ambiguities imposed by
similarities of genomes. It has superior performance over existing
methods.
