gasic 0.0.r19-5 source package in Ubuntu


gasic (0.0.r19-5) unstable; urgency=medium

  * Use 2to3 to port to Python3
    Closes: #936582
  * In the executable mason from seqan-apps version 1.x
    was called.  This is not available any more in seqan-apps 2.x and
    thus it was replaced by mason_simulator.  Hope that's OK.
  * debhelper-compat 12
  * Standards-Version: 4.4.1
  * Remove trailing whitespace in debian/changelog
  * Use secure URI in debian/watch.
  * Set upstream metadata fields: Archive.

 -- Andreas Tille <email address hidden>  Tue, 08 Oct 2019 15:54:54 +0200

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Uploaded by:
Debian Med on 2019-10-08
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

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Series Pocket Published Component Section
Focal release on 2019-10-25 universe misc


File Size SHA-256 Checksum
gasic_0.0.r19-5.dsc 2.0 KiB 85b219c5c64801d1bb69980adc6eb1953a7dc2fe6da440e0500defdd9765cb1e
gasic_0.0.r19.orig.tar.xz 12.1 KiB dcda434ace63719c7d3baca18c5da9adfe0e8a269b8dc6224306be9ddec9b8a9
gasic_0.0.r19-5.debian.tar.xz 8.2 KiB 085e09e1a264100220941771c403ec513b853c41055d35dbfe583f5a794bd0c0

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Binary packages built by this source

gasic: genome abundance similarity correction

 One goal of sequencing based metagenomic analysis is the quantitative
 taxonomic assessment of microbial community compositions. However, the
 majority of approaches either quantify at low resolution (e.g. at phylum
 level) or have severe problems discerning highly similar species. Yet,
 accurate quantification on species level is desirable in applications
 such as metagenomic diagnostics or community comparison. GASiC is a
 method to correct read alignment results for the ambiguities imposed by
 similarities of genomes. It has superior performance over existing