Ubuntu
gbrowse package

gbrowse 2.56+dfsg-12build1 source package in Ubuntu

Changelog

gbrowse (2.56+dfsg-12build1) noble; urgency=medium

  * No-change rebuild for the perl update.

 -- Matthias Klose <email address hidden>  Thu, 11 Jan 2024 03:49:46 +0100

Upload details

Uploaded by:
Matthias Klose
Uploaded to:
Noble
Original maintainer:
Debian Med
Architectures:
any all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
gbrowse_2.56+dfsg.orig.tar.gz 4.2 MiB f6da1ff315b17ec260810cf439a54ae7ddd66728015be03f7fbb6ba795676f81
gbrowse_2.56+dfsg-12build1.debian.tar.xz 24.1 KiB 1e70359db6f98bf7a4213a2599517e6b661cc507f0aea9584f733ed520e05357
gbrowse_2.56+dfsg-12build1.dsc 2.6 KiB 38b76592eb702e6cf52b4d85fb7007e15d9936f99af10054bf244b35fcff4881

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Binary packages built by this source

gbrowse: GMOD Generic Genome Browser

 Generic Genome Browser is a simple but highly
 configurable web-based genome browser. It is a component of the
 Generic Model Organism Systems Database project (GMOD).
 Some of its features:
  * Simultaneous bird's eye and detailed views of the genome;
  * Scroll, zoom, center;
  * Attach arbitrary URLs to any annotation;
  * Order and appearance of tracks are customizable by administrator and
    end-user;
  * Search by annotation ID, name, or comment;
  * Supports third party annotation using GFF formats;
  * Settings persist across sessions;
  * DNA and GFF dumps;
  * Connectivity to different databases, including BioSQL and Chado;
  * Multi-language support;
  * Third-party feature loading;
  * Customizable plug-in architecture (e.g. run BLAST, dump & import many
    formats, find oligonucleotides, design primers, create restriction maps,
    edit features).

gbrowse-calign: CAlign helper

 Generic Genome Browser is a simple but highly
 configurable web-based genome browser. It is a component of the
 Generic Model Organism Systems Database project (GMOD).
 .
 This package provides the CAlign helper
 for use with Realign. It speeds up Smith-Waterman alignment.

gbrowse-calign-dbgsym: debug symbols for gbrowse-calign
gbrowse-data: Sample data to use GBrowse

 Generic Genome Browser is a simple but highly
 configurable web-based genome browser. It is a component of the
 Generic Model Organism Systems Database project (GMOD).
 .
 This package contains sample data to test the gbrowse tool
 with the Yeast genome.