Ubuntu
gbrowse package

gbrowse 2.56+dfsg-5 source package in Ubuntu

Changelog

gbrowse (2.56+dfsg-5) unstable; urgency=medium

  * debhelper-compat 12
  * Standards-Version: 4.4.1
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Remove trailing whitespace in debian/changelog
  * Remove trailing whitespace in debian/copyright
  * Remove trailing whitespace in debian/rules
  * Set fields Upstream-Name in debian/copyright.
  * (Build-)Depends: libbio-db-seqfeature-perl
    Closes: #929506

 -- Andreas Tille <email address hidden>  Sun, 01 Dec 2019 08:57:29 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
science
Urgency:
Medium Urgency

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Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
gbrowse_2.56+dfsg-5.dsc 2.6 KiB 1a09e71e071f86ce715aef4a076303c9f9e4498dd05e622777fc9970622c8a9f
gbrowse_2.56+dfsg.orig.tar.gz 4.2 MiB f6da1ff315b17ec260810cf439a54ae7ddd66728015be03f7fbb6ba795676f81
gbrowse_2.56+dfsg-5.debian.tar.xz 23.1 KiB 2381b086dd9775906f0712281f0ae224bf27c460fc1d9839d290497bbc8cff69

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Binary packages built by this source

gbrowse: GMOD Generic Genome Browser

 Generic Genome Browser is a simple but highly
 configurable web-based genome browser. It is a component of the
 Generic Model Organism Systems Database project (GMOD).
 Some of its features:
  * Simultaneous bird's eye and detailed views of the genome;
  * Scroll, zoom, center;
  * Attach arbitrary URLs to any annotation;
  * Order and appearance of tracks are customizable by administrator and
    end-user;
  * Search by annotation ID, name, or comment;
  * Supports third party annotation using GFF formats;
  * Settings persist across sessions;
  * DNA and GFF dumps;
  * Connectivity to different databases, including BioSQL and Chado;
  * Multi-language support;
  * Third-party feature loading;
  * Customizable plug-in architecture (e.g. run BLAST, dump & import many
    formats, find oligonucleotides, design primers, create restriction maps,
    edit features).

gbrowse-calign: CAlign helper

 Generic Genome Browser is a simple but highly
 configurable web-based genome browser. It is a component of the
 Generic Model Organism Systems Database project (GMOD).
 .
 This package provides the CAlign helper
 for use with Realign. It speeds up Smith-Waterman alignment.

gbrowse-calign-dbgsym: debug symbols for gbrowse-calign
gbrowse-data: Sample data to use GBrowse

 Generic Genome Browser is a simple but highly
 configurable web-based genome browser. It is a component of the
 Generic Model Organism Systems Database project (GMOD).
 .
 This package contains sample data to test the gbrowse tool
 with the Yeast genome.