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gff2aplot package

gff2aplot 2.0-14 source package in Ubuntu

Changelog

gff2aplot (2.0-14) unstable; urgency=medium

  [ Andreas Tille ]
  * Fix homepage
  * Define HOME=/tmp to enable salsa-ci building this package

  [ Diane Trout ]
  * Update watch file to new upsream location

  [ Andreas Tille ]
  * Standards-Version: 4.6.0 (routine-update)
  * No tab in license text (routine-update)

 -- Andreas Tille <email address hidden>  Thu, 09 Sep 2021 06:58:51 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release universe science
Lunar release universe science
Jammy release universe science

Downloads

File Size SHA-256 Checksum
gff2aplot_2.0-14.dsc 2.0 KiB f684de25487cd43e98f988d64c58b51f13803977c355668f41b6abfb861705b3
gff2aplot_2.0.orig.tar.gz 320.7 KiB 33798a1f2877fc9d64aaf143c2e5bb909021b1f147c6718e61fbcc96cc65ccc3
gff2aplot_2.0-14.debian.tar.xz 20.2 KiB d7c73ac1ad965057ba8feffcd2e167bf324d96db1e64113428a1ce48ffb44542

Available diffs

No changes file available.

Binary packages built by this source

gff2aplot: pair-wise alignment-plots for genomic sequences in PostScript

 A program to visualize the alignment of two genomic sequences together with
 their annotations. From GFF-format input files it produces PostScript figures
 for that alignment.
 The following menu lists many features of gff2aplot:
  * Comprehensive alignment plots for any GFF-feature. Attributes are defined
    separately so you can modify only whatsoever attributes for a given file or
    share same customization across different data-sets.
  * All parameters are set by default within the program, but it can be also
    fully configured via gff2ps-like flexible customization files. Program can
    handle several of such files, summarizing all the settings before producing
    the corresponding figure. Moreover, all customization parameters can be set
    via command-line switches, which allows users to play with those parameters
    before adding any to a customization file.
  * Source order is taken from input files, if you swap file order you can
    visualize alignment and its annotation with the new input arrangement.
  * All alignment scores can be visualized in a PiP box below gff2aplot area,
    using grey-color scale, user-defined color scale or score-dependent
    gradients.
  * Scalable fonts, which can also be chosen among the basic PostScript default
    fonts. Feature and group labels can be rotated to improve readability in
    both annotation axes.
  * The program is still defined as a Unix filter so it can handle data from
    files, redirections and pipes, writing output to standard-output and
    warnings to standard error.
  * gff2aplot is able to manage many physical page formats (from A0 to A10, and
    more -see available page sizes in its manual-), including user-defined ones.
    This allows, for instance, the generation of poster size genomic maps, or
    the use of a continuous-paper supporting plotting device, either in portrait
    or landscape.
  * You can draw different alignments on same alignment plot and distinguish
    them by using different colors for each.
  * Shape dictionary has been expanded, so that further feature shapes are now
    available (see manual).
  * Annotation projections through alignment plots (so called ribbons) emulate
    transparencies via complementary color fill patterns. This feature allows
    one to show color pseudo-blending when horizontal and vertical ribbons
    overlap.

gff2aplot-dbgsym: debug symbols for gff2aplot