gff2aplot 2.0-8 source package in Ubuntu

Changelog

gff2aplot (2.0-8) unstable; urgency=medium

  * Moved debian/upstream to debian/upstream/metadata
  * cme fix dpkg-control
  * spelling
  * Fix Mayhem bug
    Closes: #715627

 -- Andreas Tille <email address hidden>  Sun, 13 Dec 2015 21:17:30 +0100

Upload details

Uploaded by:
Debian Med on 2015-12-14
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Artful release on 2017-04-20 universe science
Xenial release on 2015-12-14 universe science

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File Size SHA-256 Checksum
gff2aplot_2.0-8.dsc 2.0 KiB a8c071d652237a7511ce10f95d3fa3dac313872fc0d67ad6cdc38081e6ce72f7
gff2aplot_2.0.orig.tar.gz 320.7 KiB 33798a1f2877fc9d64aaf143c2e5bb909021b1f147c6718e61fbcc96cc65ccc3
gff2aplot_2.0-8.debian.tar.xz 10.3 KiB ce39ca7767342da74d850f6f93de5d2e9764bff6c6a515aad9aa7493aad347cd

Available diffs

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Binary packages built by this source

gff2aplot: pair-wise alignment-plots for genomic sequences in PostScript

 A program to visualize the alignment of two genomic sequences together with
 their annotations. From GFF-format input files it produces PostScript figures
 for that alignment.
 The following menu lists many features of gff2aplot:
  * Comprehensive alignment plots for any GFF-feature. Attributes are defined
    separately so you can modify only whatsoever attributes for a given file or
    share same customization across different data-sets.
  * All parameters are set by default within the program, but it can be also
    fully configured via gff2ps-like flexible customization files. Program can
    handle several of such files, summarizing all the settings before producing
    the corresponding figure. Moreover, all customization parameters can be set
    via command-line switches, which allows users to play with those parameters
    before adding any to a customization file.
  * Source order is taken from input files, if you swap file order you can
    visualize alignment and its annotation with the new input arrangement.
  * All alignment scores can be visualized in a PiP box below gff2aplot area,
    using grey-color scale, user-defined color scale or score-dependent
    gradients.
  * Scalable fonts, which can also be chosen among the basic PostScript default
    fonts. Feature and group labels can be rotated to improve readability in
    both annotation axes.
  * The program is still defined as a Unix filter so it can handle data from
    files, redirections and pipes, writing output to standard-output and
    warnings to standard error.
  * gff2aplot is able to manage many physical page formats (from A0 to A10, and
    more -see available page sizes in its manual-), including user-defined ones.
    This allows, for instance, the generation of poster size genomic maps, or
    the use of a continuous-paper supporting plotting device, either in portrait
    or landscape.
  * You can draw different alignments on same alignment plot and distinguish
    them by using different colors for each.
  * Shape dictionary has been expanded, so that further feature shapes are now
    available (see manual).
  * Annotation projections through alignment plots (so called ribbons) emulate
    transparencies via complementary color fill patterns. This feature allows
    one to show color pseudo-blending when horizontal and vertical ribbons
    overlap.

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