Ubuntu
gmap package

gmap 2013-07-20-1 source package in Ubuntu

Changelog

gmap (2013-07-20-1) unstable; urgency=low


  * New upstream version
  * debian/control:
     - cme fix dpkg-control
     - debhelper 9

 -- Andreas Tille <email address hidden>  Fri, 02 Aug 2013 15:09:36 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Low Urgency

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File Size SHA-256 Checksum
gmap_2013-07-20-1.dsc 1.3 KiB e2f20674a7630509b0452f268536b016baeee0a7f087baee41b0170aecf7e5a8
gmap_2013-07-20.orig.tar.gz 3.6 MiB 0a091af6af7743d9b0ac04d9960044afde4b7f755ea311abbeaa53ab201b9c0c
gmap_2013-07-20-1.debian.tar.gz 12.4 KiB b7b096877cfacb5b18fdd9100eb13928c420885306a6e5a8f3863379310eba61

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Binary packages built by this source

gmap: spliced and SNP-tolerant alignment for mRNA and short reads

 This package contains the programs GMAP and GSNAP as well as
 utilities to manage genome databases in GMAP/GSNAP format.
 GMAP (Genomic Mapping and Alignment Program) is a tool for aligning
 EST, mRNA and cDNA sequences.
 GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for
 aligning single-end and paired-end transcriptome reads.
 Both tools can use a database of
 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).
 GSNAP can align bisulfite-treated DNA.