hisat2 2.0.5-1 source package in Ubuntu


hisat2 (2.0.5-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Architecture: amd64 kfreebsd-amd64
    Closes: #834862, #834863
  * d/watch:
     - version=4
     - xz compression
  * debhelper 10

 -- Andreas Tille <email address hidden>  Fri, 09 Dec 2016 13:45:26 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Original maintainer:
Debian Med
amd64 kfreebsd-amd64
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section


Zesty: [FULLYBUILT] amd64


File Size SHA-256 Checksum
hisat2_2.0.5-1.dsc 1.9 KiB 49f2cbbac1ef959d1fa5a681db549016dc291411db4cea9a445d6d6586ec9e6c
hisat2_2.0.5.orig.tar.xz 2.6 MiB 840dc9313d0a117d0079923427b3d1900f5d1379d91bc0e1f33dfd1d850bf042
hisat2_2.0.5-1.debian.tar.xz 5.1 KiB 44bdebdca98cc469f828d4a547c60595ce252fafd3da2d603771f85f71220a29

Available diffs

No changes file available.

Binary packages built by this source

hisat2: graph-based alignment of short nucleotide reads to many genomes

 HISAT2 is a fast and sensitive alignment program for mapping next-generation
 sequencing reads (both DNA and RNA) to a population of human genomes (as well
 as against a single reference genome). Based on an extension of BWT for graphs
 a graph FM index (GFM) was designed and implementd. In addition to using
 one global GFM index that represents a population of human genomes, HISAT2
 uses a large set of small GFM indexes that collectively cover the whole genome
 (each index representing a genomic region of 56 Kbp, with 55,000 indexes
 needed to cover the human population). These small indexes (called local
 indexes), combined with several alignment strategies, enable rapid and
 accurate alignment of sequencing reads. This new indexing scheme is called a
 Hierarchical Graph FM index (HGFM).

hisat2-dbgsym: debug symbols for hisat2