Ubuntu
hmmer package

hmmer 3.2.1+dfsg-3 source package in Ubuntu

Changelog

hmmer (3.2.1+dfsg-3) unstable; urgency=medium

  [ Michael R. Crusoe ]
  * Team upload.
  * HMMER3 has long required SSE or Altivec/VMX instruction support and the
    3.2.1 release enforces this, so we will follow upstreams lead:
    debian/control: Architecture: any-amd64 any-i386 powerpc ppc64 x32
  * debhelper-compat 12
  * Enable a verbose build log
  * Fixed the buildsystem to show commands executed and to build in parallel
  * Using the above, fixed the buildsystem to enable hardening
  * Fixed some spelling errors; thanks lintian!
  * Made autopkgtests more verbose
    Closes: #941805

  [ Andreas Tille ]
  * Standards-Version: 4.4.1
  * Set upstream metadata fields: Bug-Submit.
  * Remove obsolete fields Name, Contact from debian/upstream/metadata.
  * DEP3 for skip check for threads

 -- Michael R. Crusoe <email address hidden>  Tue, 08 Oct 2019 10:53:29 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any-amd64 any-i386 powerpc ppc64 all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Builds

Focal: [FULLYBUILT] amd64 [FULLYBUILT] i386

Downloads

File Size SHA-256 Checksum
hmmer_3.2.1+dfsg-3.dsc 2.1 KiB 024e308c16700fd1f0a67f6cf17991d2307a76869d8c6b0060d30ac463ca2d22
hmmer_3.2.1+dfsg.orig.tar.xz 5.7 MiB cfbb105edc1aba8bab22bf254a2144f894dd53c36a6d58b93e818efcdf649d2d
hmmer_3.2.1+dfsg-3.debian.tar.xz 11.9 KiB 4d2c90bbd4b6c4f29d5354320982ac63b69990e17d490da1d0cd43357edc68b7

Available diffs

No changes file available.

Binary packages built by this source

hmmer: profile hidden Markov models for protein sequence analysis

 HMMER is an implementation of profile hidden Markov model methods for
 sensitive searches of biological sequence databases using multiple sequence
 alignments as queries.
 .
 Given a multiple sequence alignment as input, HMMER builds a statistical
 model called a "hidden Markov model" which can then be used as a query into
 a sequence database to find (and/or align) additional homologues of the
 sequence family.

hmmer-dbgsym: debug symbols for hmmer
hmmer-doc: profile hidden Markov models for protein sequence analysis (docs)

 HMMER is an implementation of profile hidden Markov model methods for
 sensitive searches of biological sequence databases using multiple sequence
 alignments as queries.
 .
 Given a multiple sequence alignment as input, HMMER builds a statistical
 model called a "hidden Markov model" which can then be used as a query into
 a sequence database to find (and/or align) additional homologues of the
 sequence family.
 .
 This package contains the documentation and a tutorial for the hmmer package.

hmmer-examples: profile hidden Markov models for protein sequence analysis (examples)

 HMMER is an implementation of profile hidden Markov model methods for
 sensitive searches of biological sequence databases using multiple sequence
 alignments as queries.
 .
 Given a multiple sequence alignment as input, HMMER builds a statistical
 model called a "hidden Markov model" which can then be used as a query into
 a sequence database to find (and/or align) additional homologues of the
 sequence family.
 .
 This package contains example files to test the hmmer package.