Change log for htsjdk package in Ubuntu
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htsjdk (4.1.0+dfsg-1) unstable; urgency=medium * New upstream version 4.1.0+dfsg * Refreshing patches -- Pierre Gruet <email address hidden> Sun, 11 Feb 2024 22:41:39 +0100
Available diffs
- diff from 4.0.2+dfsg-2 to 4.1.0+dfsg-1 (9.3 KiB)
htsjdk (4.0.2+dfsg-2) unstable; urgency=medium * Excluding one more test needing the network -- Pierre Gruet <email address hidden> Thu, 14 Dec 2023 13:05:18 +0100
Available diffs
- diff from 3.0.5+dfsg-2 to 4.0.2+dfsg-2 (31.9 KiB)
htsjdk (3.0.5+dfsg-2) unstable; urgency=medium * Ensuring directories exist before the unit tests attempt to create files inside (Closes: #1055447) -- Pierre Gruet <email address hidden> Wed, 08 Nov 2023 10:13:12 +0100
Available diffs
- diff from 3.0.5+dfsg-1 to 3.0.5+dfsg-2 (964 bytes)
Superseded in noble-release |
Published in mantic-release |
Deleted in mantic-proposed (Reason: Moved to mantic) |
htsjdk (3.0.5+dfsg-1) unstable; urgency=medium * New upstream version 3.0.5+dfsg * Refreshing patches * Skipping more tests needing the network -- Pierre Gruet <email address hidden> Tue, 20 Jun 2023 14:46:10 +0200
Available diffs
- diff from 3.0.4+dfsg-2 to 3.0.5+dfsg-1 (37.8 KiB)
Superseded in mantic-release |
Published in lunar-release |
Deleted in lunar-proposed (Reason: Moved to lunar) |
htsjdk (3.0.4+dfsg-2) unstable; urgency=high * Team upload. * debian/tests/control: Restrict all tests to architectures supported by sra-sdk, which subsumed ngs-sdk: amd64 and arm64. -- Aaron M. Ucko <email address hidden> Mon, 23 Jan 2023 22:16:14 -0500
Available diffs
- diff from 3.0.4+dfsg-1 to 3.0.4+dfsg-2 (723 bytes)
htsjdk (3.0.4+dfsg-1) unstable; urgency=medium * New upstream version 3.0.4+dfsg * Refreshing patches * Raising Standards version to 4.6.2 (no change) -- Pierre Gruet <email address hidden> Tue, 27 Dec 2022 20:25:59 +0100
Available diffs
- diff from 3.0.2+dfsg-1 to 3.0.4+dfsg-1 (1.7 KiB)
htsjdk (3.0.2+dfsg-1) unstable; urgency=medium * Adding missing DEP-3 headers to patches * Forwarding patches -- Pierre Gruet <email address hidden> Thu, 03 Nov 2022 20:54:49 +0100
Available diffs
- diff from 2.24.1+dfsg-3 to 3.0.2+dfsg-1 (219.7 KiB)
Superseded in lunar-release |
Obsolete in kinetic-release |
Deleted in kinetic-proposed (Reason: Moved to kinetic) |
htsjdk (2.24.1+dfsg-3) unstable; urgency=medium * Restricting the architectures set to run pilon-related autopkgtest, based on the actual tests run in the pilon package -- Pierre Gruet <email address hidden> Sat, 05 Mar 2022 07:33:09 +0100
Available diffs
- diff from 2.24.1+dfsg-1 to 2.24.1+dfsg-3 (3.7 KiB)
Superseded in kinetic-release |
Published in jammy-release |
Deleted in jammy-proposed (Reason: Moved to jammy) |
htsjdk (2.24.1+dfsg-1) unstable; urgency=medium [ Olivier Sallou ] * lintian fixes in d/patches [ Pierre Gruet ] * New upstream version 2.24.1+dfsg * Setting Standards version to 4.6.0 (no change) * Refreshing d/copyright * Refreshing poms * Refreshing patches * Skipping more tests using http * Refreshing classpath of the build jar * Updating dependencies list * Using json-simple instead of unpackaged mjson * Adding myself as uploader * Removing default gbp.conf file * Adding a Lintian override for the embedded Javascript * Marking the -doc package as Multi-Arch: foreign * Trim trailing whitespace. * Use secure URI in Homepage field. * Forwarding patches * Adding description of patch 120-fix-build.patch * Refreshing libhtsjdk-java.README.Debian -- Pierre Gruet <email address hidden> Tue, 23 Nov 2021 22:03:25 +0100
Available diffs
- diff from 2.23.0+dfsg-2 to 2.24.1+dfsg-1 (83.4 KiB)
Superseded in jammy-release |
Obsolete in impish-release |
Obsolete in hirsute-release |
Deleted in hirsute-proposed (Reason: moved to Release) |
htsjdk (2.23.0+dfsg-2) unstable; urgency=medium * source-only upload -- Olivier Sallou <email address hidden> Tue, 22 Sep 2020 13:14:11 +0000
Available diffs
- diff from 2.22.0+dfsg-1 to 2.23.0+dfsg-2 (33.3 KiB)
Superseded in hirsute-release |
Obsolete in groovy-release |
Deleted in groovy-proposed (Reason: moved to Release) |
htsjdk (2.22.0+dfsg-1) unstable; urgency=medium * New upstream release -- Olivier Sallou <email address hidden> Fri, 29 May 2020 11:08:17 +0000
Available diffs
- diff from 2.18.2+dfsg-2 to 2.22.0+dfsg-1 (587.4 KiB)
Superseded in groovy-release |
Published in focal-release |
Obsolete in eoan-release |
Obsolete in disco-release |
Deleted in disco-proposed (Reason: moved to release) |
htsjdk (2.18.2+dfsg-2) unstable; urgency=medium [ Matthias Klose ] * Disabled the java/htsjdk/samtools/util/HttpUtilsTest test, requires network access. Closes: #923539 -- Andreas Tille <email address hidden> Fri, 01 Mar 2019 23:04:57 +0100
Available diffs
htsjdk (2.18.2+dfsg-1ubuntu1) disco; urgency=medium * Disabled the java/htsjdk/samtools/util/HttpUtilsTest test, requires network access. -- Matthias Klose <email address hidden> Fri, 01 Mar 2019 17:16:14 +0100
Available diffs
Superseded in disco-proposed |
htsjdk (2.18.2+dfsg-1) unstable; urgency=medium * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/changelog [ Olivier Sallou ] * d/p/110-debian-lib-version.patch: use scala-library 2.11, v2.12 not yet in Debian * fix some reflection tests issues with testng -- Andreas Tille <email address hidden> Thu, 24 Jan 2019 17:31:54 +0100
Available diffs
- diff from 2.16.1+dfsg-3 to 2.18.2+dfsg-1 (221.7 KiB)
htsjdk (2.16.1+dfsg-3) unstable; urgency=medium * Fix FTBS on debian test servers due to ip/name resolution Remove related test. Closes: #913839 -- Olivier Sallou <email address hidden> Fri, 16 Nov 2018 11:06:41 +0000
Available diffs
- diff from 2.16.1+dfsg-2 to 2.16.1+dfsg-3 (1.7 KiB)
htsjdk (2.16.1+dfsg-2) unstable; urgency=medium * Fix FTBS with OpenJDK 11 (Closes: #913566) -- Olivier Sallou <email address hidden> Mon, 12 Nov 2018 15:38:32 +0000
Available diffs
- diff from 2.14.3+dfsg-2 to 2.16.1+dfsg-2 (128.4 KiB)
- diff from 2.16.1+dfsg-1 to 2.16.1+dfsg-2 (1.3 KiB)
Superseded in disco-proposed |
htsjdk (2.16.1+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version * debhelper 11 * Standards-Version: 4.2.1 * Skip test requiring http connection * d/rules: Respect DEB_BUILD_OPTIONS in override_dh_auto_test [ Olivier Sallou ] * Skip test requiring ftp connection -- Andreas Tille <email address hidden> Wed, 19 Sep 2018 08:11:13 +0200
Available diffs
- diff from 2.14.3+dfsg-3 to 2.16.1+dfsg-1 (127.8 KiB)
htsjdk (2.14.3+dfsg-3) unstable; urgency=medium * Reintroduce unit tests after jcommander fix -- Olivier Sallou <email address hidden> Mon, 06 Aug 2018 07:03:33 +0000
Available diffs
- diff from 2.14.3+dfsg-2 to 2.14.3+dfsg-3 (448 bytes)
Superseded in disco-release |
Obsolete in cosmic-release |
Deleted in cosmic-proposed (Reason: moved to release) |
htsjdk (2.14.3+dfsg-2) unstable; urgency=medium * Upload to unstable * Bumped versioned Build-Depends on default-jdk -- Andreas Tille <email address hidden> Thu, 24 May 2018 07:53:54 +0200
Available diffs
- diff from 2.8.1+dfsg-2 to 2.14.3+dfsg-2 (347.2 KiB)
Superseded in cosmic-release |
Published in bionic-release |
Deleted in bionic-proposed (Reason: moved to release) |
htsjdk (2.8.1+dfsg-2) unstable; urgency=medium * d/patches/50-fix-build.patch, d/rules: fix testng declaration and disable unit testing due to gradle bug that will be fixed by gradle 3.4 => lower severity of #877590 -- Olivier Sallou <email address hidden> Wed, 01 Nov 2017 09:25:25 +0000
Available diffs
- diff from 2.8.1+dfsg-1 to 2.8.1+dfsg-2 (785 bytes)
Superseded in bionic-release |
Obsolete in artful-release |
Obsolete in zesty-release |
Deleted in zesty-proposed (Reason: moved to release) |
htsjdk (2.8.1+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version Closes: #847736 * debhelper 10 * d/watch: version=4 [ Vincent Danjean ] * Add junit4 to Build-Depends -- Andreas Tille <email address hidden> Sun, 18 Dec 2016 12:40:37 +0100
Available diffs
- diff from 2.1.1+dfsg.1-1 to 2.8.1+dfsg-1 (9.5 MiB)
- diff from 2.7.0+dfsg-2 to 2.8.1+dfsg-1 (51.1 KiB)
Superseded in zesty-proposed |
htsjdk (2.7.0+dfsg-2) unstable; urgency=medium * Fix mess in this changelog (the previous upload is missing the 2.6.1+dfsg-1 entry) -- Vincent Danjean <email address hidden> Sun, 27 Nov 2016 21:14:49 +0100
Available diffs
- diff from 2.6.1+dfsg-1 to 2.7.0+dfsg-2 (42.3 KiB)
Superseded in zesty-proposed |
htsjdk (2.6.1+dfsg-1) unstable; urgency=medium * New upstream version -- Andreas Tille <email address hidden> Sat, 10 Sep 2016 08:10:12 +0200
Available diffs
- diff from 2.5.0+dfsg.2-2 to 2.6.1+dfsg-1 (31.6 KiB)
htsjdk (2.5.0+dfsg.2-2) unstable; urgency=medium [ Vincent Danjean ] * Tweak build-dependencies [ Andreas Tille ] * Remove some more tests needing http or ftp connections Closes: #830298 -- Andreas Tille <email address hidden> Sun, 10 Jul 2016 19:11:39 +0200
Available diffs
Superseded in yakkety-proposed |
htsjdk (2.5.0+dfsg.2-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version * Take over change from debian/jessie-backports branch to successfully obtain JAVA_HOME * Bump Standards-Version to 3.9.8 * Simplified watch file [ Vincent Danjean ] * Skip tests checking the use of the local zip implementation * Adaptation to the new gradle build system * Rework debian/copyright (new source layout) * Add a maven2 pom file for htsjdk -- Vincent Danjean <email address hidden> Thu, 07 Jul 2016 00:12:44 +0200
Available diffs
Superseded in zesty-release |
Obsolete in yakkety-release |
Deleted in yakkety-proposed (Reason: moved to release) |
htsjdk (2.1.1+dfsg.1-1) unstable; urgency=medium [ Andreas Tille ] * Make sure repackaged tarball is compressed with xz [ Vincent Danjean ] * New upstream version * Bump Standard-Version to 3.9.7 * Switch back to default-jdk now that it is >= 1.8 -- Vincent Danjean <email address hidden> Mon, 14 Mar 2016 22:13:50 +0100
Available diffs
- diff from 2.0.1+dfsg.1-1 to 2.1.1+dfsg.1-1 (107.0 KiB)
Superseded in yakkety-release |
Published in xenial-release |
Deleted in xenial-proposed (Reason: moved to release) |
htsjdk (2.0.1+dfsg.1-1) unstable; urgency=medium * New upstream version * remove network tests (Closes: #808593) -- Andreas Tille <email address hidden> Mon, 15 Feb 2016 08:28:50 +0100
Available diffs
- diff from 1.138+dfsg.1-4 to 2.0.1+dfsg.1-1 (131.1 KiB)
Superseded in xenial-proposed |
htsjdk (1.138+dfsg.1-4) unstable; urgency=medium * rename (again) the source package, as htsjdk (1.138+dfsg.1-2) passed the NEW queue. Both name (htsjdk and libhtsjdk-java) are acceptable, so continuing with the one accepted by the FTP team. -- Vincent Danjean <email address hidden> Sat, 19 Dec 2015 21:30:58 +0100
Available diffs
Superseded in xenial-proposed |
htsjdk (1.138+dfsg.1-2) unstable; urgency=medium * Fix version in MANIFEST -- Vincent Danjean <email address hidden> Mon, 07 Sep 2015 01:31:14 +0200
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